Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1542 ATGGCTCGAGACGGGCATGTGGTGCCGTTGGATCCACAAACACAAACAGCTTTAACTTCGAAGAAAAAAAAACAATCTTCTCGGAATTGGATTTTGTTAGATTGTACTGGACAAGGAACCGTTCTCGATGTGGACAAATATGGTATCATGCATCGTGTTCAAATTCATGCTCGTGACCTCAGAATTCTCGACCCTTTACTTTCTTACCCTTCCACCATTCTTGGTCGTGAAAAAGCTATTGTTCTTAATCTCGAGCATATCAAAGCTATCATTACTGCTGAAGAGGTTTTGCTTAGGGACCCAACAGATGAAAATGTCATTCCTGTGGTTGAGGAGCTACAAAGGCGATTGCCTCCTGATAATGCCTTCCAAATTCAAGGAGATGGAAAAGAGTATCAGGGTGCTCAAAATGATGCTGAGGCTGAAGAAGACGAATCTCCATTTGAATTTCGTGCACTTGAGGTAGCTTTGGAAGCTATATGTAGTTTTCTTGCCGCACGAACCACTGAACTGGAGACTGCTGCATATCCTGCCTTGGATGAGCTTACTGCCAAGATTAGCAGCCGTAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCAAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTGGATGATGATGATGATATGGCAGACCTTTACTTGTCAAGAAAGTTGGCTAGTGCTTCCCCAGTAAGTGGTTCCGGTCCTGCCAATTGGTTTCCTGCTTCTCCTACCATTGGTTCAAAGATCTCAAGAGCGAGTCGAGGAAGTATTGCAACTGTACGCGGGGATGAGAATGATGTTGAGGAGCTCGAAATGTTGCTGGAGGCTTACTTTATGCAGATTGATGGTACACTGAACAAATTAACTACACTAAGAGAATATATTGACGACACAGAAGATTACATCAATATTCAGCTCGACAATCATCGAAATCAGCTCATTCAGTTGGAGCTGTTTTTAAGTTCAGGAACCGTTTGTTTGTCGATTTATTCTTTGGTGGGTGGAATATTTGGTATGAACATTCCGTACACTTGGAATGATGATCATGGCTTCATGTTTAAATGGGTAGTCATCATCACTGGAGCAGCCTGTGCTTTGCTATTTATTGCAACTATTTCCTATGCTCGCTACAAAGGTTTAGTGGGATCTTAA 1182 42.47 MARDGHVVPLDPQTQTALTSKKKKQSSRNWILLDCTGQGTVLDVDKYGIMHRVQIHARDLRILDPLLSYPSTILGREKAIVLNLEHIKAIITAEEVLLRDPTDENVIPVVEELQRRLPPDNAFQIQGDGKEYQGAQNDAEAEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLASASPVSGSGPANWFPASPTIGSKISRASRGSIATVRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVGGIFGMNIPYTWNDDHGFMFKWVVIITGAACALLFIATISYARYKGLVGS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48822187 48826030 - evm.model.ptg000003l.250 HCH6g1542 547036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1542 393 Pfam CorA-like Mg2+ transporter protein 282 379 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
HCH6g1542 393 Gene3D - 14 101 - -
HCH6g1542 393 CDD Mrs2_Mfm1p-like 30 390 IPR039204 -
HCH6g1542 393 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 329 379 IPR045863 -
HCH6g1542 393 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 17 390 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
HCH6g1542 393 MobiDBLite consensus disorder prediction 1 22 - -
HCH6g1542 393 Pfam Magnesium transporter MRS2-like 43 235 - -
HCH6g1542 393 Coils Coil 194 221 - -
HCH6g1542 393 Gene3D Magnesium transport protein CorA, transmembrane region 106 323 - -
HCH6g1542 393 MobiDBLite consensus disorder prediction 124 144 - -
HCH6g1542 393 FunFam Magnesium transporter MRS2-1 18 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0297 HCH-Chr6:4354754 HCH6g1542 HCH-Chr6:48822187 3.50E-88 dispersed
HCH11g0836 HCH-Chr11:39144320 HCH6g1542 HCH-Chr6:48822187 7.40E-86 transposed
HCH7g0748 HCH-Chr7:10192029 HCH6g1542 HCH-Chr6:48822187 1.10E-79 transposed
HCH5g0064 HCH-Chr5:389426 HCH6g1542 HCH-Chr6:48822187 2.60E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1542 K16075 - csv:101203841 674.085