Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1542 ATGGCTCGAGACGGGCATGTGGTGCCGTTGGATCCACAAACACAAACAGCTTTAACTTCGAAGAAAAAAAAACAATCTTCTCGGAATTGGATTTTGTTAGATTGTACTGGACAAGGAACCGTTCTCGATGTGGACAAATATGGTATCATGCATCGTGTTCAAATTCATGCTCGTGACCTCAGAATTCTCGACCCTTTACTTTCTTACCCTTCCACCATTCTTGGTCGTGAAAAAGCTATTGTTCTTAATCTCGAGCATATCAAAGCTATCATTACTGCTGAAGAGGTTTTGCTTAGGGACCCAACAGATGAAAATGTCATTCCTGTGGTTGAGGAGCTACAAAGGCGATTGCCTCCTGATAATGCCTTCCAAATTCAAGGAGATGGAAAAGAGTATCAGGGTGCTCAAAATGATGCTGAGGCTGAAGAAGACGAATCTCCATTTGAATTTCGTGCACTTGAGGTAGCTTTGGAAGCTATATGTAGTTTTCTTGCCGCACGAACCACTGAACTGGAGACTGCTGCATATCCTGCCTTGGATGAGCTTACTGCCAAGATTAGCAGCCGTAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCAAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTGGATGATGATGATGATATGGCAGACCTTTACTTGTCAAGAAAGTTGGCTAGTGCTTCCCCAGTAAGTGGTTCCGGTCCTGCCAATTGGTTTCCTGCTTCTCCTACCATTGGTTCAAAGATCTCAAGAGCGAGTCGAGGAAGTATTGCAACTGTACGCGGGGATGAGAATGATGTTGAGGAGCTCGAAATGTTGCTGGAGGCTTACTTTATGCAGATTGATGGTACACTGAACAAATTAACTACACTAAGAGAATATATTGACGACACAGAAGATTACATCAATATTCAGCTCGACAATCATCGAAATCAGCTCATTCAGTTGGAGCTGTTTTTAAGTTCAGGAACCGTTTGTTTGTCGATTTATTCTTTGGTGGGTGGAATATTTGGTATGAACATTCCGTACACTTGGAATGATGATCATGGCTTCATGTTTAAATGGGTAGTCATCATCACTGGAGCAGCCTGTGCTTTGCTATTTATTGCAACTATTTCCTATGCTCGCTACAAAGGTTTAGTGGGATCTTAA 1182 42.47 MARDGHVVPLDPQTQTALTSKKKKQSSRNWILLDCTGQGTVLDVDKYGIMHRVQIHARDLRILDPLLSYPSTILGREKAIVLNLEHIKAIITAEEVLLRDPTDENVIPVVEELQRRLPPDNAFQIQGDGKEYQGAQNDAEAEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLASASPVSGSGPANWFPASPTIGSKISRASRGSIATVRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVGGIFGMNIPYTWNDDHGFMFKWVVIITGAACALLFIATISYARYKGLVGS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48822187 48826030 - evm.model.ptg000003l.250 HCH6g1542 547036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1542 393 Pfam CorA-like Mg2+ transporter protein 282 379 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
HCH6g1542 393 Gene3D - 14 101 - -
HCH6g1542 393 CDD Mrs2_Mfm1p-like 30 390 IPR039204 -
HCH6g1542 393 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 329 379 IPR045863 -
HCH6g1542 393 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 17 390 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
HCH6g1542 393 MobiDBLite consensus disorder prediction 1 22 - -
HCH6g1542 393 Pfam Magnesium transporter MRS2-like 43 235 - -
HCH6g1542 393 Coils Coil 194 221 - -
HCH6g1542 393 Gene3D Magnesium transport protein CorA, transmembrane region 106 323 - -
HCH6g1542 393 MobiDBLite consensus disorder prediction 124 144 - -
HCH6g1542 393 FunFam Magnesium transporter MRS2-1 18 101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1542 K16075 - - csv:101203841 674.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0297 HCH-Chr6:4354754 HCH6g1542 HCH-Chr6:48822187 3.50E-88 dispersed
HCH11g0836 HCH-Chr11:39144320 HCH6g1542 HCH-Chr6:48822187 7.40E-86 transposed
HCH7g0748 HCH-Chr7:10192029 HCH6g1542 HCH-Chr6:48822187 1.10E-79 transposed
HCH5g0064 HCH-Chr5:389426 HCH6g1542 HCH-Chr6:48822187 2.60E-151 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g0297 . 1 449 MRS2 Gene Family AT1G16010 83.1 2.3e-204 708.4
HCH4g0153 . 6 383 MRS2 Gene Family AT1G16010 55.8 1.6e-112 403.3
HCH5g0064 . 27 386 MRS2 Gene Family AT1G16010 50.3 4.6e-88 322.0
HCH6g1542 . 1 366 MRS2 Gene Family AT5G64560 81.9 1.6e-161 565.8
HCH5g0064 . 1 372 MRS2 Gene Family AT5G64560 70.7 8.6e-136 480.3
HCH7g0748 . 36 497 MRS2 Gene Family AT3G19640 67.9 4.1e-159 558.1
HCH11g0836 . 1 449 MRS2 Gene Family AT3G58970 64.6 1.6e-146 516.2
HCH4g0153 . 6 383 MRS2 Gene Family AT2G03620 71.4 1.1e-142 503.4
HCH6g0297 . 13 449 MRS2 Gene Family AT2G03620 52.5 2.5e-112 402.5
HCH6g1542 . 1 328 MRS2 Gene Family AT5G09690 76.2 6.2e-127 450.7
HCH5g0064 . 1 334 MRS2 Gene Family AT5G09690 66.7 4.6e-114 407.9
HCH6g0297 . 39 385 MRS2 Gene Family AT5G09690 50.4 4.1e-78 288.5
HCH6g1542 . 12 288 MRS2 Gene Family AT5G09720 67.0 8.5e-91 330.5
HCH5g0064 . 33 294 MRS2 Gene Family AT5G09720 62.2 4.9e-78 288.1
HCH6g0297 . 1 449 MRS2 Gene Family AT1G80900 81.8 1.3e-199 692.6
HCH4g0153 . 6 383 MRS2 Gene Family AT1G80900 54.8 5.0e-111 398.3
HCH3g1132 . 117 456 MRS2 Gene Family AT5G22830 82.6 1.3e-157 553.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58