Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1548 ATGGAACCACCGACTCCTCCTCCACTTCCTCCGCCGCCGACCGGATCCATTCTCCTTGGAAAATATCAATTTGGTCGTTTTCTCGGCCGAGGTAGCTTCGCGAAGGTTTACCAAGCCCGTTCATTATCCGACAACTCTGTCGTCGCCGTTAAAATTATCGACAAAAACAAAACGGTTGACGCCGTTATGGAACGTTGCATTGTTCGTGAAATCGCTGTTATGCGCCACCTTCAACAACATCCTAATGTCCTTAAAATTCACGAAGTTATGGCTACGAAATCAAAGATCTACCTTGTCGTTGAATTCGCTTCTGGCGGTGAACTTTTCGCTAAGATATTACGTCGTGGTCGGTTAACGGAATCCACCGCCCGCCGTTACTTTCAACAGCTTGTTTCAGCCCTTCACTTTTGTCATCTTAACGGCGTTGCTCACCGTGATATTAAGCCTCAAAATCTTCTCTTGGATGAAGATGGGATTTTGAAAGTTTCTGATTTTGGGCTCTCGGCTTTGCCGGAACAGATTAAGAATGGTATGCTTCATACGGCGTGTGGAACTCCGTCGTATACGGCGCCGGAGGTGGTGGCACGGCGGGGCTACGACGGCGCTAAAGCTGATGCTTGGTCTTGTGGGGTTATACTTTTTGTTTTACTTGCCGGGCATCTTCCATTTAGCGATAGCAATCTTGTTGCTATGTATAAGAAGATTTACCGGCGAGAGTATCAATTTCCTGATTGGTTTTCGAAACCGGTGCGGTATTTGATCTTTCAATTACTGGATCCGAATCCGGAGTCGAGGATGAGCATTGAGGCTTTAATGCAGCATTCATGGTATAAGAAGTCATTGAGATCAAAACCAAAGAATGATAATAAGAGTTTGTTTGAATCATTGGTTAATTATAGATCTGATTTGGGTGTTCCTTCGATGAATGCATTTGATATTATATCGATGTCTTCGGGGTTGGACTTATCGGGGTTGTTTGAGACAATGGATTGTAAGAAGAAGAGGTTTACAACAGGAGTGAGTATGGAGAAAGTGGAGGAAAGGGTAACAGAGATAGGAGGGGAATTGGGGTATAGAGTTGAGAAAGGGAAAAGTGGAGCAATTGGGTTGGGGAAAGGGAGGGTGATTCTAGTGATGGAAGTTTTGGAAATAACAGCTAATCTGTTGATGGTGGAGGTGAAGGTGGCTGAAGCAATGGTGGAGTTTGAACAAATGCATTGGGGAGATTTGAAAGCAAAGTTACAGGATATTGTTGTTTCTTGGCACAGCAACGAGGAGGCTATGTGA 1287 44.68 MEPPTPPPLPPPPTGSILLGKYQFGRFLGRGSFAKVYQARSLSDNSVVAVKIIDKNKTVDAVMERCIVREIAVMRHLQQHPNVLKIHEVMATKSKIYLVVEFASGGELFAKILRRGRLTESTARRYFQQLVSALHFCHLNGVAHRDIKPQNLLLDEDGILKVSDFGLSALPEQIKNGMLHTACGTPSYTAPEVVARRGYDGAKADAWSCGVILFVLLAGHLPFSDSNLVAMYKKIYRREYQFPDWFSKPVRYLIFQLLDPNPESRMSIEALMQHSWYKKSLRSKPKNDNKSLFESLVNYRSDLGVPSMNAFDIISMSSGLDLSGLFETMDCKKKRFTTGVSMEKVEERVTEIGGELGYRVEKGKSGAIGLGKGRVILVMEVLEITANLLMVEVKVAEAMVEFEQMHWGDLKAKLQDIVVSWHSNEEAM 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48864907 48866193 - evm.model.ptg000003l.244 HCH6g1548 547042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1548 428 SMART serkin_6 22 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1548 428 Gene3D Kinase associated domain 1, KA1 303 420 - -
HCH6g1548 428 FunFam Non-specific serine/threonine protein kinase 13 301 - -
HCH6g1548 428 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165(InterPro)
HCH6g1548 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g1548 428 ProSiteProfiles Protein kinase domain profile. 22 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1548 428 Gene3D Transferase(Phosphotransferase) domain 1 108 300 - -
HCH6g1548 428 CDD CIPK_C 309 411 - -
HCH6g1548 428 Gene3D Phosphorylase Kinase; domain 1 25 107 - -
HCH6g1548 428 Pfam NAF domain 307 362 IPR004041 GO:0007165(InterPro)
HCH6g1548 428 SUPERFAMILY Protein kinase-like (PK-like) 18 287 IPR011009 -
HCH6g1548 428 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524(InterPro)
HCH6g1548 428 Pfam Protein kinase domain 22 276 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1548 428 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 16 394 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH6g1548 428 FunFam Non-specific serine/threonine protein kinase 15 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1548 HCH-Chr6:48864907 HCH9g0825 HCH-Chr9:5774557 9.20E-102 dispersed
HCH6g1548 HCH-Chr6:48864907 HCH10g0306 HCH-Chr10:2517667 1.20E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81601 PF00069 Pkinase 8.30E-70 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1548 K12761 - csv:101215156 726.857