Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1589 ATGAATGGTGATACAACAAACTCTGAACCAGACAACTCTGAATATGTCGAAGTTGATCCTTCTGGAAGATACGGCAGATACAATGAAATTCTTGGCAAAGGAGCATCAAAGACAGTTTATAGAGCATTTGATGAGTATGAAGGAATTGAAGTGGCATGGAATCAAGTGAAGCTCTGTGACTTTCTTCAAAGTTCTGAAGATCTTGAAAGACTATACAGAGAAATCCATTTGTTGAAGACTCTTAAACACAACAATATAATGAAGTTTTATTCTTCTTGGGTTGATACTGCTAATAGAAATATTAACTTTGTCACTGAGATGTTTACTTCTGGGACTCTTAGACAATATAGGCTGAGACACAAGAGAGTTAACATAAGAGCTGTGAAGCAATGGTGCAGACAGATTTTAAGGGGTCTTCTCTATCTTCACAACCATGACCCACCTGTAATCCATAGAGACCTCAAGTGTGATAATATTTTTGTCAATGGGAATCAAGGGGAAGTTAAGATTGGTGATCTTGGCCTAGCTGCAATTCTTCGCAAAACCTACGCGGCTCGTTGCGTTGGAACGCCAGAGTTCATGGCTCCAGAAATTTATGAAGAGGAATATAATGAATTGGTTGATATATATTCATTTGGAATGTGCATCTTGGAGATGGTTACCTTTGAATATCCATACAGTGAATGCACCCACCCTGCTCAGATATACAAGAAAGTGATCTCTGGGAAAAAACCAGATGCTCTATATAAAGTAAAAGACCCCGAGGTTCGATATTTTATCGAGAAATGCTTAGCTACTGTATCAACTAGGCTCTCTGCTAGAGAACTTCTGAATGATCCTTTTCTCCAAGTTGATGGCTATGATTCCTTGTTGAGGCCCTACTATTCAGAATTAAGTGAAGTAAACCCTCTCATTGGAGGACATCTCTATGGAACTCCTAATGGTCCTTTAACTAATGGATACACAGATTATTTCGGTCACGAGCCTGGAAGCGTTTTGGATTACCATCCAGCCGATAATGAAGCAAGCGAAATCGATCTTTTCTCCTGTCAAGAGGATGAGCATTTGGAAGATATTGATGTTACAATTAAAGGGAGGAGAAGAGGGGATGATGATATATTTTTAAGGCTCAGAATTGCTGATAAAGATGGCCGGATTCGAAATATCTACTTCCCCTTTGATTTAGAGACTGACAGTGGATTGAGTGTTGCAAATGAAATGATTTCAGAGCTTGATATTACTGATCAAGATGTGAAAAAAATTGCTGACATGATAGATGGTGAAATTACTACTTTGGTGCCGGAGTGGAAGAGGGTAACAAGCTTAGAGGAAACTCCAGAATGCAATGGATCTAATATTTGTCACAATTGTGCTTTAAATAGTCCTCTTAAGGATTATGTTTCACCTCATAATCCAGCTACCAAGAACCTGCACGTTATTCGGTGTTCTGAGCACGGATGTACTTCGATCCATGGCCGTTTTGAAGAGATCACATACCAAGTTGAAGAATTAGAACAAGGCAATGAAGAAGAAATCTTGCACAAAACATCGGAGAAACCGAATACTATCCATTATGCGGATATTTGGGCTCAGCGAGATGGACCTGATTTAATTTCTCATGAATCTGGTGAAATCAACTTCGATGAAGCATGTGAACAGCCAAATCTTGAGAAGGAAGAGAGAACTGTAAATATAGACAATCATCAAAGGGGGTGCCAACCAAGAAACTCTGTCTCATCAAATCCTTCAGTGTCATTATCTTTTGGTGATGATCATGAGAATGAAATTAGACAAGAACTAAGATGGCTGAAAGCAAAGTATCAAATGCAATTGAGAGAGCTAAGGGATCAACAATTAGGAGTGAAGTCCAAATCTCTTAGTTTACAGCCAAATCATAATCTAACAGAGAATGTCGATGGAGCTTCGTCGTCTCTCCTCTCACCAAACCTTAATGAAGCAAAGAATAAGCCTCTCCTGAAATCTCTTCCTGACAAGAATTCACAGAGTTCCCTTGTTTCTGATTACAAAGAGACTAATTTGGAAAACCAAACCTTTCAAGATAATCATGTAATCAACGAGTCCTATAGCCCCGAGCAGATGATTACGGCCAAGAGTTTCTACTCTGGAGTATTACTTCCTCATTCTCTTCACAGAGCAACCTCCCTTCCTGTTGATGCTATTATAGATTTTTAA 2193 39.03 MNGDTTNSEPDNSEYVEVDPSGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLCDFLQSSEDLERLYREIHLLKTLKHNNIMKFYSSWVDTANRNINFVTEMFTSGTLRQYRLRHKRVNIRAVKQWCRQILRGLLYLHNHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKTYAARCVGTPEFMAPEIYEEEYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRYFIEKCLATVSTRLSARELLNDPFLQVDGYDSLLRPYYSELSEVNPLIGGHLYGTPNGPLTNGYTDYFGHEPGSVLDYHPADNEASEIDLFSCQEDEHLEDIDVTIKGRRRGDDDIFLRLRIADKDGRIRNIYFPFDLETDSGLSVANEMISELDITDQDVKKIADMIDGEITTLVPEWKRVTSLEETPECNGSNICHNCALNSPLKDYVSPHNPATKNLHVIRCSEHGCTSIHGRFEEITYQVEELEQGNEEEILHKTSEKPNTIHYADIWAQRDGPDLISHESGEINFDEACEQPNLEKEERTVNIDNHQRGCQPRNSVSSNPSVSLSFGDDHENEIRQELRWLKAKYQMQLRELRDQQLGVKSKSLSLQPNHNLTENVDGASSSLLSPNLNEAKNKPLLKSLPDKNSQSSLVSDYKETNLENQTFQDNHVINESYSPEQMITAKSFYSGVLLPHSLHRATSLPVDAIIDF 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49078327 49081272 - evm.model.ptg000003l.203 HCH6g1589 547083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1589 730 Gene3D Transferase(Phosphotransferase) domain 1 108 287 - -
HCH6g1589 730 SMART serkin_6 25 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1589 730 Coils Coil 597 617 - -
HCH6g1589 730 MobiDBLite consensus disorder prediction 568 588 - -
HCH6g1589 730 MobiDBLite consensus disorder prediction 624 650 - -
HCH6g1589 730 Gene3D - 372 461 - -
HCH6g1589 730 SUPERFAMILY Protein kinase-like (PK-like) 28 283 IPR011009 -
HCH6g1589 730 FunFam Probable serine/threonine-protein kinase WNK1 10 106 - -
HCH6g1589 730 FunFam probable serine/threonine-protein kinase WNK9 108 287 - -
HCH6g1589 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g1589 730 CDD STKc_WNK 23 282 - -
HCH6g1589 730 Gene3D Phosphorylase Kinase; domain 1 9 106 - -
HCH6g1589 730 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 618 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
HCH6g1589 730 MobiDBLite consensus disorder prediction 1 20 - -
HCH6g1589 730 ProSiteProfiles Protein kinase domain profile. 25 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1589 730 MobiDBLite consensus disorder prediction 568 589 - -
HCH6g1589 730 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0772 HCH-Chr10:7501607 HCH6g1589 HCH-Chr6:49078327 9.50E-224 dispersed
HCH6g0855 HCH-Chr6:43362482 HCH6g1589 HCH-Chr6:49078327 1.10E-96 dispersed
HCH6g1589 HCH-Chr6:49078327 HCH8g0180 HCH-Chr8:6924322 1.90E-187 dispersed
HCH3g0374 HCH-Chr3:2372024 HCH6g1589 HCH-Chr6:49078327 2.50E-145 transposed
HCH9g0831 HCH-Chr9:5873604 HCH6g1589 HCH-Chr6:49078327 1.90E-126 transposed
HCH10g0767 HCH-Chr10:7343252 HCH6g1589 HCH-Chr6:49078327 1.10E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81602 PF00069 Pkinase 1.40E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1589 K08867 - csv:101210511 1127.08