Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1594 ATGGGATTTCTTAAATCTGAAAATGGAAACAACCATCTGGAAGGTCTTGAAAGCCCTTTGCGAAGCTTACAAATTAGCGTTGTGGTGATGGGGAGTAGAACAAAGATATTTATTGTTTTGGAGTTTGTAACTGGCGGAGAGCTTTTTGATAAAATTGTAAATCATGGGCGGATGAGAGAAGACGACGCACGTAGATATTTCCAGCAACTTATCAATGCTGTTGATTATTGTCATAGTAGGGGTGTTTACCACCGAGATCTCAAGCCAGAAAATATTTTGTTAGATTCATACGGAAACCTTAAAGTTTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTCAAGGACGATGGCCTGCTTCACACTACTTGTGGGACTCCAAACTATGTTGCTCCTGAGGTGCAGACCATTGCTTGA 417 40.77 MGFLKSENGNNHLEGLESPLRSLQISVVVMGSRTKIFIVLEFVTGGELFDKIVNHGRMREDDARRYFQQLINAVDYCHSRGVYHRDLKPENILLDSYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVQTIA 138
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 49107869 49113109 - evm.model.ptg000003l.198 HCH6g1594 547088
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1594 138 Gene3D Transferase(Phosphotransferase) domain 1 23 136 - -
HCH6g1594 138 Pfam Protein kinase domain 30 134 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1594 138 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 29 134 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH6g1594 138 ProSiteProfiles Protein kinase domain profile. 1 138 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1594 138 SUPERFAMILY Protein kinase-like (PK-like) 33 134 IPR011009 -
HCH6g1594 138 ProSitePatterns Serine/Threonine protein kinases active-site signature. 82 94 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g1594 138 SMART serkin_6 3 138 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1594 HCH-Chr6:49107869 HCH7g1747 HCH-Chr7:49176292 5.70E-45 dispersed
HCH6g1594 HCH-Chr6:49107869 HCH2g1466 HCH-Chr2:56197623 1.70E-57 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81603 PF00069 Pkinase 1.70E-33 CL0016 HCH PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1594 - - - 0.0