Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH6g1594 | ATGGGATTTCTTAAATCTGAAAATGGAAACAACCATCTGGAAGGTCTTGAAAGCCCTTTGCGAAGCTTACAAATTAGCGTTGTGGTGATGGGGAGTAGAACAAAGATATTTATTGTTTTGGAGTTTGTAACTGGCGGAGAGCTTTTTGATAAAATTGTAAATCATGGGCGGATGAGAGAAGACGACGCACGTAGATATTTCCAGCAACTTATCAATGCTGTTGATTATTGTCATAGTAGGGGTGTTTACCACCGAGATCTCAAGCCAGAAAATATTTTGTTAGATTCATACGGAAACCTTAAAGTTTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTCAAGGACGATGGCCTGCTTCACACTACTTGTGGGACTCCAAACTATGTTGCTCCTGAGGTGCAGACCATTGCTTGA | 417 | 40.77 | MGFLKSENGNNHLEGLESPLRSLQISVVVMGSRTKIFIVLEFVTGGELFDKIVNHGRMREDDARRYFQQLINAVDYCHSRGVYHRDLKPENILLDSYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVQTIA | 138 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 49107869 | 49113109 | - | evm.model.ptg000003l.198 | HCH6g1594 | 547088 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH6g1594 | 138 | Gene3D | Transferase(Phosphotransferase) domain 1 | 23 | 136 | - | - | |
| HCH6g1594 | 138 | Pfam | Protein kinase domain | 30 | 134 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| HCH6g1594 | 138 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 29 | 134 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
| HCH6g1594 | 138 | ProSiteProfiles | Protein kinase domain profile. | 1 | 138 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| HCH6g1594 | 138 | SUPERFAMILY | Protein kinase-like (PK-like) | 33 | 134 | IPR011009 | - | |
| HCH6g1594 | 138 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 82 | 94 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| HCH6g1594 | 138 | SMART | serkin_6 | 3 | 138 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH6g1594 | HCH-Chr6:49107869 | HCH7g1747 | HCH-Chr7:49176292 | 5.70E-45 | dispersed | |
| HCH6g1594 | HCH-Chr6:49107869 | HCH2g1466 | HCH-Chr2:56197623 | 1.70E-57 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 81603 | PF00069 | Pkinase | 1.70E-33 | CL0016 | HCH | PK |
Pathway information