Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH6g1601 | ATGCTATCGAATGGAATGGACAAAACCAAGATGATGTGGTCACGTCTTCCGAATACAGAGGAAAACGAACACGATCGTGTTGGTTTCTTGAAGAAGAATGATGGAGGTGGAGTCGAGAGCCTCGATTATGAGGTTATTGAGAATTATGCCTACTGGGATGAGCAGGCGCAAAGAGGGAGGCTTTTTGTTGGTTATAGTGTTGTAGTTAAGTGGCTGTATGCTTTGCTTATTGGCATTGGCACGGGATTGGCTGCAGTTTTCATAAATATGGCAGTCGAGAACTTTGCTGGCTGGAAATTTTCATTGACGTTTGCCCTAATACAGAAGTCATATGTGGCCGGTTTTATATTATACTCAACAATCAACTTGGCTTTAGTATTTTCCTCAGTGTATATTGTCACTCACTTTGCTCCTGCAGCAGCTGGATCTGGCATACCTGAAATTAAGGGTTATTTAAATGGAATTGATATTCATGGTGTCCTGTTTTTCAGAACCTTGATTGGAAAGATATTTGGAAGTATTGGCTCAGTGGGAGGTGGATTGGCACTAGGCAAAGAGGGCCCTCTTGTACATACTGGTGCTTGTATTGCTTCTTTGTTAGGACAAGGTGGATCTGCTAAATATCATCTAAATTCCAAGTGGCTACAAGTGTTCAAGAGTGACCGGGACCGTCGTGATCTTGTGACATGTGGCTGTGCAGCAGGAGTTGCTGCTGCTTTTAGAGCTCCAGTTGGTGGTGTATTATTTGCACTCGAAGAAGTAACATCTTGGTGGAAGAGCCAACTTTTGTGGCGGGTGTTCTTCTCTTCTGCCGCGGTGGCTGTTGTGGTGCGTGCGGCAATGGGTTGGTGTAAGAGTGGGAAGTGTGGACATTTTGGTTCTGGTGGTTTCATAATCTGGGACATTTCAGATGGCCAAGAGGATTACTCTTTTGGGGAGTTGTTGCCGATGACTGTGATTGGAGTTATTGGAGGTTTATTAGGAGCACTATTCAACCAACTTACTCTTTACATGACTTATTGGCGACGAAATTATTTACACAAGAAGGGGAACCGAGTCAAGATTATTGAAGCTTGTCTCATCTCACTAATAACATCAATGATTTCCTTCGGACTACCACTTCTAAAAAAATGTACGCCATGCCCAAAATCCGATCCCCAACTGGGTAATGAATGCCCAAGGCCTCCTGGGATGTACGGGAATTTTGTTAATTTTTACTGCAGTAAGGACAATGAATACAATGACCTTGCCACCATTTTCTTCAACACCCAGGATGACGCTATAAGGAATTTGTTCAGTGCAAAAACAATGCATGAATTCAGTGCCCGAAGTTTACTGACCTTCTTGGTTATGTTTTATACCTTAGCTGTGGTGACATTTGGTACTGCCGTTCCTGCTGGTCAATTTGTTCCTGGTATTATGATTGGATCCACCTATGGACGTTTAGTTGGCAAGTTTGTTGTTGATTTCTACAAGAAACCCAACATTGAAGAGGGAACATATGCCTTATTGGGGGCTGCATCTTTTCTCGGAGGTTCTATGCGAATGACGGTCTCTCTATGTGTCATTATGGTTGAAATATCAAATAATTTGAAATTTTTACCCCTCATCATGCTTGTCCTTCTGATTTCGAAGGCTGTTGGTGATGCCTTTAATGAAGGCTTGTATGAAGAGCAGGCTCAATTGAAAGGTATTCCGTTACTGGAATCAAGACCAAAGTACCAGATGCGGAAAATTACGGCCAAGGAAGCCTGTGGAAAAAGGGTGGTCTCCTTCCCTCGTGTTGTTAAGGTTGCAGACGTTGTTACTATTTTGCGGAGCAATGAACACAATGGTTTTCCAGTGATTGACCACTCTAGAAATGGGGAAGCACATGTCATTGGACTAATGCTACGAAGTCATTTGTTAGGACTTCTGCAGTCTAAAGTAGAGTTTCAGCACAGTCCTTTGCCTTCTGATCTGAGGGCATCCACACCGACCAGGCACAAGTCCAGTGATTTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATAGATGATATAAATCTTAGTTCAGATGACATGGAAATGTACATCGATCTACTGCCATATCTGAATCCATCTCCCTATATTGTCCCAGAAGACATGTCTTTGACAAAGGTATATAATCTTTTCCGGCAGCTTGGACTGAGACATATATTTGTTGTACCCCGTCCAGCAAATGTGATTGGTTTGATCACCAGAAAGGATTTGTTGATAGAGGATAGTGATGATTCAGATGCAGTAGAACTACTATCGACAAGTAGCTCGGCGTCATGA | 2298 | 42.69 | MLSNGMDKTKMMWSRLPNTEENEHDRVGFLKKNDGGGVESLDYEVIENYAYWDEQAQRGRLFVGYSVVVKWLYALLIGIGTGLAAVFINMAVENFAGWKFSLTFALIQKSYVAGFILYSTINLALVFSSVYIVTHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSAKYHLNSKWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWKSQLLWRVFFSSAAVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFGELLPMTVIGVIGGLLGALFNQLTLYMTYWRRNYLHKKGNRVKIIEACLISLITSMISFGLPLLKKCTPCPKSDPQLGNECPRPPGMYGNFVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTMHEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVDFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGLYEEQAQLKGIPLLESRPKYQMRKITAKEACGKRVVSFPRVVKVADVVTILRSNEHNGFPVIDHSRNGEAHVIGLMLRSHLLGLLQSKVEFQHSPLPSDLRASTPTRHKSSDFVKPASSKGISIDDINLSSDDMEMYIDLLPYLNPSPYIVPEDMSLTKVYNLFRQLGLRHIFVVPRPANVIGLITRKDLLIEDSDDSDAVELLSTSSSAS | 765 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 49180183 | 49186281 | - | evm.model.ptg000003l.191 | HCH6g1601 | 547095 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH6g1601 | 765 | CDD | ClC_6_like | 39 | 568 | - | - | |
| HCH6g1601 | 765 | FunFam | Chloride channel protein | 690 | 765 | - | - | |
| HCH6g1601 | 765 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 589 | 745 | - | - | |
| HCH6g1601 | 765 | PRINTS | Chloride channel signature | 169 | 188 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH6g1601 | 765 | PRINTS | Chloride channel signature | 138 | 155 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH6g1601 | 765 | PRINTS | Chloride channel signature | 233 | 252 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH6g1601 | 765 | PRINTS | Chloride channel signature | 464 | 484 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH6g1601 | 765 | PRINTS | Chloride channel signature | 517 | 536 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH6g1601 | 765 | PRINTS | Chloride channel signature | 499 | 515 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH6g1601 | 765 | PRINTS | Chloride channel signature | 555 | 569 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH6g1601 | 765 | ProSiteProfiles | CBS domain profile. | 698 | 755 | IPR000644 | - | |
| HCH6g1601 | 765 | Gene3D | - | 570 | 751 | IPR046342 | - | |
| HCH6g1601 | 765 | PRINTS | Plant CLC chloride channel signature | 416 | 432 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH6g1601 | 765 | PRINTS | Plant CLC chloride channel signature | 286 | 293 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH6g1601 | 765 | PRINTS | Plant CLC chloride channel signature | 44 | 52 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH6g1601 | 765 | PRINTS | Plant CLC chloride channel signature | 254 | 262 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH6g1601 | 765 | PRINTS | Plant CLC chloride channel signature | 268 | 278 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH6g1601 | 765 | Pfam | Voltage gated chloride channel | 126 | 548 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH6g1601 | 765 | FunFam | Chloride channel ClC3 | 62 | 379 | - | - | |
| HCH6g1601 | 765 | Gene3D | Clc chloride channel | 64 | 569 | - | - | |
| HCH6g1601 | 765 | SMART | cbs_1 | 701 | 749 | IPR000644 | - | |
| HCH6g1601 | 765 | SMART | cbs_1 | 588 | 640 | IPR000644 | - | |
| HCH6g1601 | 765 | SUPERFAMILY | Clc chloride channel | 48 | 570 | IPR014743 | - | |
| HCH6g1601 | 765 | Pfam | CBS domain | 699 | 746 | IPR000644 | - | |
| HCH6g1601 | 765 | SUPERFAMILY | CBS-domain pair | 573 | 745 | IPR046342 | - | |
| HCH6g1601 | 765 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 23 | 751 | IPR051280 | GO:0015108(PANTHER)|GO:0043231(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g0934 | HCH-Chr13:12356876 | HCH6g1601 | HCH-Chr6:49180183 | 7.20E-161 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH6g1601 | K05016 | - | csv:101215989 | 1368.6 |