Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1607 ATGACGATGGCGATGCCTGGGAGCATTGTCGCCGTTCTTCTCCTTATGTTGCTTTTGATTCTCCTCCTCCTTCTCATTGCCTGTAAACCATGGCGTTTCTTTTCCTTTTCTCATTCTCGTTCTATCAAGGATGATGACCTTGAGAGACCCCTTGTTTCTGATGGTGTGGATGTGGTTCAAAACCAAAATAATGAGCTTCCTAGAGACTATGATTTGGAGGGTGCTCTCCCAGAAACTGATGATCATTTCCGGTCCCCACGATTACACGGGTTGATTCATAAACAAAGACTTCCCACTGCTTCTCCTCATTTGAATCCGGATGTAGTTTCTGATCCTTCGGAGGATATTTTCGTCGGTAAAACGCTTAAACGGTCGTACTTCACAAACCAGAGGGAAGTTCAAAGACATGCTATACAGAGTGTTGGAAATGATCAACTTCAAGATATTGCAATCCAGGATACCTCACATGAAAGAAGCTTCCTCACTCTGGAGGTCATCTCTGGTCCTTCTTCTGGACTTCGTTATTCTGTACATTCAGCAAATACATCTAGGCTACCACTCACTCTTGGAAGGGTATCTCCTAGTGATTTACAGCTTAAGGATTCAGAGGTCTCGGGGAAGCATGCCTTGATAAAATGGAATCTAAATAATATGAAATGGGAGCTAGTGGACCTGGGTAGCCTAAATGGAACACTTTTAAATTCTCAACCAATCAACAATCATGATTCTGGAAGTAGACATCGGGGTGACCCAATTCAGCTTGCAAGTGGAGATGTTATAACTCTCGGTACAACCTCCAAATTGTATGTTCATATTACATCTCAGATTGAGAACCAGATTCCCTTTGGAGTTGGTGTAGCTTCCGATCCAATGGCTTTGCGTCGAGGTGGTAAGAAGCTTGCCATGGAAGATGTTTGCTATTTCCAATGGCCTCTTCCTGGACTTGATCAGTTTGGACTCTTTGGCATCTGTGATGGGCATGGTGGAGCAGGAGCTGCTAAATCTGCTAGCGAGATTCTGCCTGAGAAGGTCGCAACAATTCTGTCCGATTCACTGAAAAGGGAAAGAGTGGTATCTCTATGTGATGCTTCAGATGTTCTTAGAGATGCATTTTCTCAGACTGAAGCTTGCATGAATCACTATTATGAGGGCTGTACTGCCACTTTGCTTCTAGTATGGGCCGATGGTAATGAAAATTACTTTGTGCAATGTGCGAATGTTGGGGACTCGGCTTGTGTTCTGAATATTGATGGGAAGCAGATAAAGATGACAGAAGACCATAGAATAACTAGTCATTCAGAAAGACTGCGATTAGAACAATCAGGAAAGCCATTGAAAGAAGGGGAGACACGTTTATGTGGCTTGAACCTTGCCAGGATGCTTGGCGACAAGTTTCTTAAACAACAAGAGAATTGTTTCAGTTCAGAACCATATATAAGTGAAGTCGTCCATGTAGATCAAGCAAGCAAGGCTTTTGCATTGATGGCAAGCGATGGCTTTTGGGATGTGATTGGTGTTAAGAAAGCAATTCAGCTAGTCGTTCAGGCTCGGGAGAGATACTCCATTGATGCGGAGTACTCAGCCGAAAAGGTTGCCAATGTTTTGTTGGGTGAGGCTCGAACGCTGCGTACGAAAGATAACACTTCCATAATTTTCTTAGATTTTGATATTTCTCATAGAATCTCTTGTAAAGTGGAACCATGA 1704 43.19 MTMAMPGSIVAVLLLMLLLILLLLLIACKPWRFFSFSHSRSIKDDDLERPLVSDGVDVVQNQNNELPRDYDLEGALPETDDHFRSPRLHGLIHKQRLPTASPHLNPDVVSDPSEDIFVGKTLKRSYFTNQREVQRHAIQSVGNDQLQDIAIQDTSHERSFLTLEVISGPSSGLRYSVHSANTSRLPLTLGRVSPSDLQLKDSEVSGKHALIKWNLNNMKWELVDLGSLNGTLLNSQPINNHDSGSRHRGDPIQLASGDVITLGTTSKLYVHITSQIENQIPFGVGVASDPMALRRGGKKLAMEDVCYFQWPLPGLDQFGLFGICDGHGGAGAAKSASEILPEKVATILSDSLKRERVVSLCDASDVLRDAFSQTEACMNHYYEGCTATLLLVWADGNENYFVQCANVGDSACVLNIDGKQIKMTEDHRITSHSERLRLEQSGKPLKEGETRLCGLNLARMLGDKFLKQQENCFSSEPYISEVVHVDQASKAFALMASDGFWDVIGVKKAIQLVVQARERYSIDAEYSAEKVANVLLGEARTLRTKDNTSIIFLDFDISHRISCKVEP 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49217018 49221293 - evm.model.ptg000003l.185 HCH6g1607 547101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1607 567 CDD PP2Cc 282 555 IPR001932 -
HCH6g1607 567 SMART FHA_2 186 238 IPR000253 GO:0005515(InterPro)
HCH6g1607 567 CDD FHA_PP2C70-like 161 271 - -
HCH6g1607 567 FunFam Protein phosphatase 2C 70 156 290 - -
HCH6g1607 567 ProSiteProfiles PPM-type phosphatase domain profile. 283 555 IPR001932 -
HCH6g1607 567 SUPERFAMILY SMAD/FHA domain 160 271 IPR008984 GO:0005515(InterPro)
HCH6g1607 567 PANTHER PROTEIN PHOSPHATASE 2C 295 555 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
HCH6g1607 567 Pfam FHA domain 188 263 IPR000253 GO:0005515(InterPro)
HCH6g1607 567 Gene3D - 291 562 IPR036457 -
HCH6g1607 567 FunFam Protein phosphatase 2C 70 291 562 - -
HCH6g1607 567 ProSiteProfiles Forkhead-associated (FHA) domain profile. 187 238 IPR000253 GO:0005515(InterPro)
HCH6g1607 567 Pfam Protein phosphatase 2C 294 548 IPR001932 -
HCH6g1607 567 ProSitePatterns PPM-type phosphatase domain signature. 320 328 IPR000222 GO:0043169(InterPro)
HCH6g1607 567 Gene3D - 155 290 - -
HCH6g1607 567 SMART PP2C_4 277 553 IPR001932 -
HCH6g1607 567 SUPERFAMILY PP2C-like 296 556 IPR036457 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1607 K01090 - csv:101217195 897.886