Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1609 ATGCAAGATTTCTTCGGATCGGTTCGCCGATCATTGGTATTTCTAACTCCCGACGGAGACGACGGGGGAAAATTCGGCGGTCTAGTCGACAAAATCGGCTCGAGCATTCGTAAATCTCGAAACGGATTTCTTTCGAAGCATTCAGTCCGATCTTTACCTCCGGTTAAGAAGGAAGACGCGCCGCCGATTTGGTGGAGGAAGGGAGAGTTGATCGGATGTGGTGCTTTTGGTCGTGTGTATATGGGAATGAATCTTGATTCTGGAGAGCTTCTTGCTGTTAAACAAGTTTCAATTGCTGCCAATAGTGCTTCAAGAGAGAAAGCACAAGCTCACATACGGGAGCTCGAGGAAGAAGTGAAACTTTTGAAGAATCTTTCCCATCCCAATATTGTGAGATATCTGGGAACTGCCAGAGAGTTAGAATCGATAAATATTTTACTGGAGTTTGTACCCGGAGGATCGATATCATCTCTGTTAGGGAAATTTGGATCTTTCCCGGAGTCCGTTATAAGAACGTATACAAAGCAGCTATTATTGGGGCTTGAGTACCTTCATAACAATGGAATTATGCATCGGGATATAAAGGGTGCAAACATTCTTGTAGACAATAAGGGATGTATTAAACTTGCAGACTTCGGTGCATCCAAGAAAGTTGTTGAGTTGGCTACTATTAATGGAGCTAAATCAATGAAGGGTACCCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGATATATGGAGTGTTGGATGCACGGTTATTGAAATGGCCACAGGAAAGCCTCCATGGAGCCAACAGTATCAAGAGGTGGCCGCTCTCTTCCATATAGGGAATACCAAGTCTCATCCGCCTATACCTGAGCATCTCTCTGCTGACGCAAAAGATTTTCTGTTAAAATGTTTACAAGAGGAGCCAAATTCAAGACCTTCTGCATCAGACTTACTGCAGCACCCATTTGTCTCATGCGAGTATCAAGCTCCTCATGCAGCACCCCAAGGCTCTTTTTCGGAACCTGGGAGACAGATGGCTAATTCTGGGCTGAATTCTAATGATTTAGTGAACCCTATGATCCGACAGTCAACTTCCATGGGTTTAAAGGACATTTGTGAGATGGGTAGCTTGCGATGCTCTACGGTATATTCTGGGAGTATATTAGGATCACGATACCAATCAAGCAATTTTGATGATGACATGTGTCAGATAGATGATAAAGATCTGTTGGTTGGTTCATCAATAAAGTACAAAACTGTTTTATCATCAAATGATGTAAATAAGAGTTTCAATCCCATGTGTGAACCCACTGACGACTGGCCATGCAAATTTGATGAAAGCTCAGAGTTGGGAGGCAATTTAATGAACTTGTCGGGCATTCAGCCTAGTCATGAAACTATTTGTAAAGAGAATGACTTCACATTTCCATGTGGTCAATCAGCAGCTGAGGATGATGAAGAGGTTACAGAGTCAAAGATTAGAGCCTTTCTTGATGAGAAGGCTGTAGAACTGAAGAAGCTACAAACACCTTTATATGAAGAGTTCCGCAGCACAATTAATGCAGCTAATACCGTCGGAGCAGTTGGAACTGAGCATAGTGAAAATGTTTCTAATAATTTAAAATTGCCTCCCAAATGTGGGTCGCCAAGCAAGCTGCATAGTAGAAGACTCTCATCATTCACTGCCGGTGACTGTTCCAGTAGTCAGAGTCGCATAAAGCGAGCTAGCATATTGCGAGATCGAACACTGCAGGAAATCCAGCCATCTCAGCTCAGTGAATGGAATGGAATCACACAGCCAGATTCTTGCACACCAAGTTTCTCTGAGAGACAAAGGAAATGGAAAGAAGAGCTCGAGGAAGAGCTTAAGAGGAAACGAGAAATGATGCGCAAAGGAGTTGTCGGAGTCACTCGCTAA 1929 43.39 MQDFFGSVRRSLVFLTPDGDDGGKFGGLVDKIGSSIRKSRNGFLSKHSVRSLPPVKKEDAPPIWWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASREKAQAHIRELEEEVKLLKNLSHPNIVRYLGTARELESINILLEFVPGGSISSLLGKFGSFPESVIRTYTKQLLLGLEYLHNNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPEHLSADAKDFLLKCLQEEPNSRPSASDLLQHPFVSCEYQAPHAAPQGSFSEPGRQMANSGLNSNDLVNPMIRQSTSMGLKDICEMGSLRCSTVYSGSILGSRYQSSNFDDDMCQIDDKDLLVGSSIKYKTVLSSNDVNKSFNPMCEPTDDWPCKFDESSELGGNLMNLSGIQPSHETICKENDFTFPCGQSAAEDDEEVTESKIRAFLDEKAVELKKLQTPLYEEFRSTINAANTVGAVGTEHSENVSNNLKLPPKCGSPSKLHSRRLSSFTAGDCSSSQSRIKRASILRDRTLQEIQPSQLSEWNGITQPDSCTPSFSERQRKWKEELEEELKRKREMMRKGVVGVTR 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49234639 49238496 - evm.model.ptg000003l.183 HCH6g1609 547103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1609 642 Gene3D Transferase(Phosphotransferase) domain 1 65 351 - -
HCH6g1609 642 FunFam Mitogen-activated protein kinase kinase kinase 2 64 355 - -
HCH6g1609 642 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524(InterPro)
HCH6g1609 642 SMART serkin_6 65 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1609 642 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 52 329 IPR050538 -
HCH6g1609 642 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1609 642 CDD STKc_MAPKKK 65 327 - -
HCH6g1609 642 FunFam Serine/threonine-protein kinase STE11 62 155 - -
HCH6g1609 642 Coils Coil 612 635 - -
HCH6g1609 642 Coils Coil 98 125 - -
HCH6g1609 642 SUPERFAMILY Protein kinase-like (PK-like) 65 328 IPR011009 -
HCH6g1609 642 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1609 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0719 HCH-Chr14:35574849 HCH6g1609 HCH-Chr6:49234639 9.10E-20 dispersed
HCH2g0727 HCH-Chr2:50980420 HCH6g1609 HCH-Chr6:49234639 5.00E-47 dispersed
HCH5g0821 HCH-Chr5:6454165 HCH6g1609 HCH-Chr6:49234639 1.60E-71 dispersed
HCH6g1522 HCH-Chr6:48702494 HCH6g1609 HCH-Chr6:49234639 9.80E-23 dispersed
HCH6g1609 HCH-Chr6:49234639 HCH11g0014 HCH-Chr11:661138 6.10E-33 dispersed
HCH10g0845 HCH-Chr10:9437847 HCH6g1609 HCH-Chr6:49234639 3.60E-198 transposed
HCH13g0101 HCH-Chr13:654791 HCH6g1609 HCH-Chr6:49234639 9.00E-18 transposed
HCH6g0400 HCH-Chr6:7819020 HCH6g1609 HCH-Chr6:49234639 1.10E-63 transposed
HCH9g0842 HCH-Chr9:5960321 HCH6g1609 HCH-Chr6:49234639 2.20E-06 transposed
HCH10g0786 HCH-Chr10:7981404 HCH6g1609 HCH-Chr6:49234639 9.20E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81604 PF00069 Pkinase 1.60E-71 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1609 K20606 - csv:101217427 1030.01