Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1620 ATGGAAATGGATCAAGTTTCCATGGCAAATCGCGTATCTGCATTATGGAATGTAATTGCTCTTAAAAGAGGTCTCGAAGGAGACAAAATTCCTTCCCGAATTGAAGAGGGTTTGTTCTTGGGTTCTTTTGGTGCTGCCTGTAACAAGGATGAACTGAAAAGATTGAATATCACTCACATTTTAACCGTTGCTAATTCTTTGCCGCCTGCTCATCCTGATACATTTGTTTATAAAATTCTTGGTGTCTTGGATACTAGAGAGACAGATATTAAACAACACTTTGATGACTGTTTCAATTTTATCGAAGAAGCAAAACGATCGGGTGGAGGTGTCCTGATTCATTGCTTCGCTGGAGTATCTAGGAGTGTAACTATTACAGTTGCCTATCTAATGAAAAAACACGGTATGAATCTAACTCGAGCATTTGAACATGTCAAGCGCAAGAGACGGCAGGCAGCTCCTAACGTTGGTTTCATGATTCAACTCAGGGACTATGAGACAGCTCTTCAAGCTAGCAAAGAGGAAGAGAGAAAGTTGACAGATATATGA 549 40.07 MEMDQVSMANRVSALWNVIALKRGLEGDKIPSRIEEGLFLGSFGAACNKDELKRLNITHILTVANSLPPAHPDTFVYKILGVLDTRETDIKQHFDDCFNFIEEAKRSGGGVLIHCFAGVSRSVTITVAYLMKKHGMNLTRAFEHVKRKRRQAAPNVGFMIQLRDYETALQASKEEERKLTDI 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49279930 49281293 + evm.model.ptg000003l.172 HCH6g1620 547114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1620 182 FunFam Dual specificity phosphatase 12 32 181 - -
HCH6g1620 182 SMART dsp_5 30 168 IPR020422 GO:0006470(InterPro)
HCH6g1620 182 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 92 149 IPR000387 GO:0016311(InterPro)
HCH6g1620 182 Pfam Dual specificity phosphatase, catalytic domain 38 167 IPR000340 GO:0016311(InterPro)
HCH6g1620 182 SMART ptp_7 62 170 IPR003595 -
HCH6g1620 182 Gene3D Protein tyrosine phosphatase superfamily 26 181 IPR029021 -
HCH6g1620 182 ProSiteProfiles Dual specificity protein phosphatase domain profile. 30 171 IPR020422 GO:0006470(InterPro)
HCH6g1620 182 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 171 IPR029021 -
HCH6g1620 182 CDD DSP 31 164 - -
HCH6g1620 182 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 30 169 - GO:0004721(PANTHER)|GO:0008330(PANTHER)|GO:0017017(PANTHER)|GO:0033550(PANTHER)|GO:0043409(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1620 HCH-Chr6:49279930 HCH9g1301 HCH-Chr9:41141066 1.60E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1620 - - - 0.0