Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1629 ATGCAGCCTGATCAGAGAAGAAAGTCATCCATCGATGTGGACTTCTTCACAGAATATGGTGAAGGGAGCAGGTATAGAATAGAGGAAGTAATTGGTAAAGGAAGTTATGGTGTTGTTTGCTCTGCATTTGATACACATACTGGGGATAAAGTTGCAATTAAGAAAATCAATGATATATTTGAGCATGTCTCTGATGCGACTCGCATTCTTCGTGAGATAAAACTTTTAAGAATTTTGCGACATCCTGACATCGTGGAGATAAAACACATCTTATTGCCTCCATCTAGAAGGGAATTCAAAGATATATATGTTGTGTTTGAGCTCATGGAATCTGATCTGCACCAAGTTATTAAAGCAAATGATGATTTGACTCCAGAACATTATCAGTTCTTTCTTTATCAGCTTCTTCGAGGCTTGAAATATATACACACAGCAAATGTCTTCCACCGGGATCTAAAACCCAAAAACATCTTAGCAAATGCTGATTGCAAACTCAAGATCTGTGACTTTGGTCTAGCAAGAGTTGCCTTTAATGATACTCCTACTGCTATTTTCTGGACTGACTATGTGGCAACAAGGTGGTACAGAGCTCCTGAGCTGTGTGGGTCATTTTTCTCAAAGTATACAACAGCAATAGATATATGGAGCATTGGGTGCATCTTTGCAGAGCTTTTAACAGGAAAACCACTTTTCCCTGGAAAGAATGTTGTCCACCAGCTAGATTTGATGACAGACTTTCTTGGAACCCCATCTGCGGAAGCCATTGCCAGGGTACGAAATGAGAAGGCTAGGAGATACTTAAGCGGCATGCGAAAGAAGAAACCTGTTCCTTTCTCTCAGAAATTTCCCAACGCAGATCCACTTGCTCTTCGTTTGTTAGAAAGAATGTTGGCTTTTGAGCCAAAGGATCGGCCAACAGCGGAGGAGGCCCTAGCAGATCCATATTTTAAAGGTTTAGCAAAGGTTGAGAGAGAACCTACTGCTCAACCTGTTACTAAGATGGAATTTGAATTTGAGAGACGAAGGATAACCAAAGAAGATGTTCGGGAGCTTATTTACCGTGAGACTCTTGAGTATCATCCAAAGATGTTAAAGGAATACTTGGATGGATCAGAACCTACTGGTTTCATGTATCCAAGTGCAGTTGACCATTTTAAGAAGCAATTTGCTTACCTCGAGGAACATTATGGAAATGGGGCAACAGTTACTCCTCCTGAAAGACAGCATGCATCCCTGCCTAGGCAATGTATTTTATATTCAGATAACATGGTGCAAAACTCAACACAAGTGACTAATGACCTCTCCAAATGTTCGATCAAAGAAACTGAGAGGCCACATGTGGATAGGAGTTGCAATATTCCCATGACTAGAGTTCCTATTCAAGTTCCTCAAACTATCCAAGGTGGTGTTCCTAGGCCCGGTAAAGTAGTTGGCTCTGTGATGCGATACAACAACTGTGGAGCAGCAGCAGCAGCAACAGAAGTTCTTGAACAACGAAGGATGACAAGGAATCCTTCTGTTCCACCTCAATACGCTGCTAATAATTGTTCATACCCACGAAGAAATGCATCCTGTAAAAATGAAAGGACAGAAGATGAAGCCATTGAAGGTTCAAGTGGGTTGCAGCCAAAGCCTCAGTACATAACTAGGAAAGTTGCTGCTGCTCAAGGTGGGCCAGGAAATAATTGGTACTGA 1695 41.59 MQPDQRRKSSIDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAFDTHTGDKVAIKKINDIFEHVSDATRILREIKLLRILRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTTAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPSAEAIARVRNEKARRYLSGMRKKKPVPFSQKFPNADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPTAQPVTKMEFEFERRRITKEDVRELIYRETLEYHPKMLKEYLDGSEPTGFMYPSAVDHFKKQFAYLEEHYGNGATVTPPERQHASLPRQCILYSDNMVQNSTQVTNDLSKCSIKETERPHVDRSCNIPMTRVPIQVPQTIQGGVPRPGKVVGSVMRYNNCGAAAAATEVLEQRRMTRNPSVPPQYAANNCSYPRRNASCKNERTEDEAIEGSSGLQPKPQYITRKVAAAQGGPGNNWY 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49363903 49368374 + evm.model.ptg000003l.163 HCH6g1629 547123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1629 564 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
HCH6g1629 564 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1629 564 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524(InterPro)
HCH6g1629 564 FunFam Mitogen-activated protein kinase 15 119 - -
HCH6g1629 564 CDD STKc_TDY_MAPK 24 361 - -
HCH6g1629 564 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1629 564 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1629 564 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
HCH6g1629 564 FunFam Mitogen-activated protein kinase 111 339 - -
HCH6g1629 564 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
HCH6g1629 564 SMART serkin_6 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1629 564 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 22 357 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0743 HCH-Chr11:36188735 HCH6g1629 HCH-Chr6:49363903 6.50E-192 dispersed
HCH5g0539 HCH-Chr5:3699647 HCH6g1629 HCH-Chr6:49363903 2.60E-95 dispersed
HCH6g1629 HCH-Chr6:49363903 HCH7g0055 HCH-Chr7:379128 5.30E-206 dispersed
HCH6g1629 HCH-Chr6:49363903 HCH2g0905 HCH-Chr2:52532151 1.80E-206 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81605 PF00069 Pkinase 1.80E-67 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1629 - - - 0.0