Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1641 ATGGGTTGTATCCATACAAAATGTTGTTGTAGTTACCCAAAATCTTTAGTTGGAGAATCCCAAGACTTTGGGCAAGGCATTCCTTACATTCTACAAAATAAAAATGCATTGATAGAGAGATCATTGGAATGTATTCCCGTTCCTTCACACAACTATCATTTAGAATATTTGGTTTTGGCTCAGCGTGGTTACTACCCAGAATCTCCTGACAAAGAAAACCAGGACAGTTTCTGTATTAGAACAAATTTACAAGGTAACCCAAATGCTCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGGATGCAATGTTCAAATTTTGTCAAGGATAGGTTAGTAGAAATACTATCTAATGACCCCACATTGTTAGATGATCCATTACTAGCATATAATTCTGCATTTTTATCCACTAATGAAGAATTGCATACTAGTGAGGTTGATGATTCCATGAGTGGAACAACCGCTATTACAGCCCTTGTTGTTGGGGACACTCTTTATGTTGCTAATGTGGGTGATTCGAGGGCGGTGATTGCGGTCAAAGAAGGGAATTGTGTCCTTGCTAAGGACTTGTCTAATGATCAAACACCATTTAGAAAGGATGAGTATGAGAGAGTGAAGCTATGTGGGGCTAGGGTACTGAGTGTTGATCAAGTGGAAGGGCTTGTGGATCCAGATATTCAGAGCTGGGGTGACGAAGAAAGTCAGGGCGGTGATCCGCCGAGATTGTGGGTCCAAAATGGGTTGTATCCTGGGACCGCCTTTACCAGGAGTGTAGGTGATAGTACTGCTGAGAAGATTGGTGTAAATGCTGTTCCTGAGGTTTCAATTGTTCAGCTTACACCTAATCATCTTTTCTTCGTTGTTGCTAGTGATGGAGTTTTTGAGTTTCTTTCTAGTCAAACGGTTGTTGATATGGCAACAAGATATGCGGATCCTCAAGATGCATGTTCTGCCATTGCTGGAGAGTCATACAAACTGTGGATGGAACATGAAAATCGCACAGATGATATAACAATCATTATTGTTCATATCAAAGGCTTGTCTAATTCAGGCGCTGTTGCCATCGCTGGATCAAGTGGGATCAGCACATGGCGAGTGAGGTCAGGCAGAGGAATTTCTGAGAATTCCTCAAGCAATGGTTCTGAGGCTCCCCCTTCTATTCGAAGCAGCTTTTCAGATCTCCAAAACTCTCAACACGTAGTTTCAACAAATCGTAGCGCAGCAATCGTAGTTCCAACTCCGAACAATGGAAGACCCTTATGA 1266 41.86 MGCIHTKCCCSYPKSLVGESQDFGQGIPYILQNKNALIERSLECIPVPSHNYHLEYLVLAQRGYYPESPDKENQDSFCIRTNLQGNPNAHFFGVFDGHGQFGMQCSNFVKDRLVEILSNDPTLLDDPLLAYNSAFLSTNEELHTSEVDDSMSGTTAITALVVGDTLYVANVGDSRAVIAVKEGNCVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQSWGDEESQGGDPPRLWVQNGLYPGTAFTRSVGDSTAEKIGVNAVPEVSIVQLTPNHLFFVVASDGVFEFLSSQTVVDMATRYADPQDACSAIAGESYKLWMEHENRTDDITIIIVHIKGLSNSGAVAIAGSSGISTWRVRSGRGISENSSSNGSEAPPSIRSSFSDLQNSQHVVSTNRSAAIVVPTPNNGRPL 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49424891 49426781 + evm.model.ptg000003l.151 HCH6g1641 547135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1641 421 SUPERFAMILY PP2C-like 48 347 IPR036457 -
HCH6g1641 421 CDD PP2Cc 71 345 IPR001932 -
HCH6g1641 421 SMART PP2C_4 56 343 IPR001932 -
HCH6g1641 421 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
HCH6g1641 421 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169(InterPro)
HCH6g1641 421 MobiDBLite consensus disorder prediction 371 404 - -
HCH6g1641 421 Gene3D - 50 347 IPR036457 -
HCH6g1641 421 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
HCH6g1641 421 PANTHER PROTEIN PHOSPHATASE 63 344 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH6g1641 421 Pfam Protein phosphatase 2C 71 321 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1641 HCH-Chr6:49424891 HCH7g0165 HCH-Chr7:1106621 5.80E-24 dispersed
HCH8g0724 HCH-Chr8:43940579 HCH6g1641 HCH-Chr6:49424891 2.80E-115 transposed
HCH8g1140 HCH-Chr8:47043317 HCH6g1641 HCH-Chr6:49424891 4.20E-09 transposed
HCH6g1641 HCH-Chr6:49424891 HCH7g1153 HCH-Chr7:44411185 1.50E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1641 - - - 0.0