Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1653 ATGAGAGCTGGAAATCAACACTTCCTATTCTTTTCTGTAACGATTTCTTGTGTTCTTATTTTTCACGTCGCCGATGGAGCTCTGATCAATAAATTCTACTGGCGAAGATGCCCACGAGCTGAAGAAATTGTGAAGGATGTTACCTTCAGAAGGGCTCGATCCAATCCTGGTCTTGGTGCTCAGCTTCTTAGACTTCAGTTCCATGATTGTTTTGTTCGGATACAGTGGCTGGAGGAAATCAATCGGAGAAGGGAAGCAAGGCCGAACCAATCACTTTTAGGTTTTGAAGTAATCGATGAAATCAAGACGGCGGTGGAGAGAGCTTGCCCTAGAGTTGTTTCCTGCGCTGACATTCTTGCCCTAGCTGCTCGTGACGCCGTTTCCTTCCCGTTCAAAAATAAGCCACTGTGGTCCGTTCGCACCGGAAGAAGAGACGGAACTGTGTCTCGATCATCAGATGTCACCGGCTATATTCCGTCGCCGTTCTCTGACTTTGCTACTCTTAAACAAAAATTTGAAAACAAGGGCCTTACTGTTAGTGATCTGGTGGTATTATCTGGCGGCCACACAATCGGCGTTGCTCACTGCGGCACCTTCTCACGGAGGCTCTACAACTTCACCGGAAAAGGAGACGCAGACCCGTCATTAAATCCAAGATACGCCAACGAACTCCGGCGAAAATGTCCAAATCCGGCGAACGCGTCAATTACGGTGGAGATGGATCCAAGGAGTTCTCGGTCATTCGATAGCAACGACTTCAAAATCTTGACTCTGGATTCGTCAGGCAGTTACAAAATCCGAGGGCTTTCACTTCTCGATTCTCCGATTCCATGTTGA 837 47.55 MRAGNQHFLFFSVTISCVLIFHVADGALINKFYWRRCPRAEEIVKDVTFRRARSNPGLGAQLLRLQFHDCFVRIQWLEEINRRREARPNQSLLGFEVIDEIKTAVERACPRVVSCADILALAARDAVSFPFKNKPLWSVRTGRRDGTVSRSSDVTGYIPSPFSDFATLKQKFENKGLTVSDLVVLSGGHTIGVAHCGTFSRRLYNFTGKGDADPSLNPRYANELRRKCPNPANASITVEMDPRSSRSFDSNDFKILTLDSSGSYKIRGLSLLDSPIPC 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49475401 49477612 - evm.model.ptg000003l.139 HCH6g1653 547147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1653 278 Gene3D - 32 158 - -
HCH6g1653 278 PANTHER PEROXIDASE 25-RELATED 29 256 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
HCH6g1653 278 FunFam Peroxidase 159 262 - -
HCH6g1653 278 Gene3D Peroxidase, domain 2 159 256 - -
HCH6g1653 278 PRINTS Haem peroxidase superfamily signature 113 130 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1653 278 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1653 278 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1653 278 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1653 278 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1653 278 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
HCH6g1653 278 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
HCH6g1653 278 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
HCH6g1653 278 Pfam Peroxidase 45 256 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1653 278 CDD secretory_peroxidase 32 256 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH6g1653 278 ProSiteProfiles Plant heme peroxidase family profile. 27 256 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1653 278 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1653 278 PRINTS Plant peroxidase signature 93 106 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1653 278 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1653 278 PRINTS Plant peroxidase signature 112 122 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1653 278 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1653 278 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1653 278 SUPERFAMILY Heme-dependent peroxidases 30 256 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1653 HCH-Chr6:49475401 HCH7g0225 HCH-Chr7:1503973 6.00E-54 dispersed
HCH6g1653 HCH-Chr6:49475401 HCH2g0749 HCH-Chr2:51161086 7.60E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1653 K00430 - csv:101215642 360.533