Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH6g1660 | ATGGCGAATAATTCGATTGTTGAAGCAGGCTTGTCGATGATGGAGTTTGGGATGGAGTTGGTTGCGGATCATACTTCAGTGGTTTCATTGAACCTATTTGTAGCTCTTCTTTGCGGTTGCATTGTTATCGGTCATTTGTTGGAGGAAAATCGATGGATTAATGAGTCTATTACAGCTCTTGTTATTGGATTGTGTACCGGCATTATAATACTGTTAACGACGAGAGGGAAAAGCTCACATATATTGATGTTCAATGAAGAGCTTTTCTTTATCTATCTCCTTCCGCCTATCATTTTCAATGCCGGGTTCCAGGTGAAGAAGAAGCAGTTTTTCCGCAACATCTTGACCATCGTGCTTTTTGGTGCCTTTGGCACTCTCATATCCTTCTGTATTATATCATTCGGCGCTTTGCACTTCTTCCAGAAAATGAATATAGGTTCCCTTGATCTTGGAGATTATCTAGCAATTGGAGCAATATTCTCTGCAACAGACTCTGTTTGTACCCTACAGGTGCTTAATCAGGATGAGACCCCTCTGCTGTATAGCCTGGTTTTCGGGGAGGGCGTGGTGAATGATGCCACATCGGTGGTGCTATTCAATGCCATCCAGAACTTAGATCTTTCTCACATCAATTCAAGCGCCATTTTCCAATTTATAGGGAACTTTTTGTATTTATTTATTGCAAGTACTGTGCTTGGAATTGTAGTTGGCCTTCTTAGTGCGTTCATAATTAAGAAGCTCTACTTTGGAAGGCATTCTACTGACCGTGAGGTTGCTCTCATGATACTCATGGCGTATCTCTCTTATATGCTAGCTGAACTCTTCTATTTAAGTGCAATTCTCACGGTATTCTTTTGCGGTATTGTTATGTCTCATTATACATGGCATAACGTGACTGAAAGTTCAAGAGTGACAACTAAGCATGCTTTTGCTACTCTTTCTTTTGTTGCCGAGATCTTTATCTTTCTCTACGTAGGCATGGATGCTCTGGATATTGAGAAGTGGAAATTTGTTAGCCATAGTCCTGGAAAATCAATTGGGGTGAGCTCAATACTCTTGGGATTGGTTCTCGTTGGAAGAGCAGCCTTTATTTTTCCTTTATCATCCTTGTCCAATCTGACCAAGAAGTCATCACATGAAAAACTCAACTTTGAACAACAAGTCACTATTTGGTGGGCAGGTCTTATGCGTGGTGCTGTATCTATGGCACTTGCTTACAATCAGTTTACAAGGTCAGGCCACACCCATTTACCAGGAAATGCAATCATGATTACAAGTACTATCACGGTTGTTCTTTCCAGCACAGTGGTATTTGGAATGATGACACAACCCCTAATCAGAATTTTGCTTCCTCAATCAAAATATTCAATGAGCATGTTATCTTCAGAACCATCTTCTCCTAAATCCTTCACCGTGCCGCTTCTTAGCGGAATCGATTCCGAGGCCGATCAAAGTGCCCAAGATATGCCACGTCGTTCCCATTCAGTACACCATTACTGGCGAAGATTTGATGATGCTTTCATGCGGCCAGTTTTTGGAGGGAGGGGTTTTGTGCCATTTATACCAGGCTCCCCCACTGAAGAAGCTGCACAACAATGGCAGAGAGAAGGAATTGAAAGCATTGACGATACCAAAACCATCATTATACAGACTCGTAGATAG | 1662 | 41.82 | MANNSIVEAGLSMMEFGMELVADHTSVVSLNLFVALLCGCIVIGHLLEENRWINESITALVIGLCTGIIILLTTRGKSSHILMFNEELFFIYLLPPIIFNAGFQVKKKQFFRNILTIVLFGAFGTLISFCIISFGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNLDLSHINSSAIFQFIGNFLYLFIASTVLGIVVGLLSAFIIKKLYFGRHSTDREVALMILMAYLSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWKFVSHSPGKSIGVSSILLGLVLVGRAAFIFPLSSLSNLTKKSSHEKLNFEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTQPLIRILLPQSKYSMSMLSSEPSSPKSFTVPLLSGIDSEADQSAQDMPRRSHSVHHYWRRFDDAFMRPVFGGRGFVPFIPGSPTEEAAQQWQREGIESIDDTKTIIIQTRR | 553 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 49508646 | 49512369 | - | evm.model.ptg000003l.132 | HCH6g1660 | 547154 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH6g1660 | 553 | PRINTS | Na+/H+ exchanger signature | 102 | 116 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH6g1660 | 553 | PRINTS | Na+/H+ exchanger signature | 88 | 99 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH6g1660 | 553 | PRINTS | Na+/H+ exchanger signature | 157 | 167 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH6g1660 | 553 | PRINTS | Na+/H+ exchanger signature | 117 | 125 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH6g1660 | 553 | Pfam | Sodium/hydrogen exchanger family | 34 | 446 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| HCH6g1660 | 553 | Gene3D | - | 150 | 201 | - | - | |
| HCH6g1660 | 553 | NCBIfam | sodium/hydrogen exchanger 3 | 31 | 479 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH6g1660 | 553 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 26 | 535 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g1234 | HCH-Chr12:11917744 | HCH6g1660 | HCH-Chr6:49508646 | 3.50E-172 | transposed | |
| HCH3g1040 | HCH-Chr3:14586478 | HCH6g1660 | HCH-Chr6:49508646 | 2.70E-42 | transposed | |
| HCH8g0159 | HCH-Chr8:6006909 | HCH6g1660 | HCH-Chr6:49508646 | 1.40E-221 | transposed | |
| HCH4g0977 | HCH-Chr4:6268901 | HCH6g1660 | HCH-Chr6:49508646 | 1.00E-179 | wgd |
Pathway information