Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1661 ATGTCTCTAAAGAGTATACTCCAAGATATGAGGTCACGTTCGCGCCGCGTGGTCCAGGACGGCTCGGCGGCGGAGCCGAAAGACGGTCTTGACCAAAGTTGCTGGGCCAATATGCCTCAAGAGCTTCTTAGAGAAGTTTTGATGAAAATTGAGGCATCGGAGAATATTTGGCCGCCGAGAAAAAGCGTCGTCGCTTGTGCCGGAGTTTGCCGGAGTTGGAGGACGATTACTAAAGAGATCGTCAAAACTCCTGAGGTTTCCGGCAGGTTGACGTTTCCGATCTCTGTTAAGCAGCCGGGTCCAAGGGATGATCTTATGAAGTGTTTCATAAAACGGAACAGATCTACTCAAACTTATTATCTTTTCCTTAGTTTGACCAACACGCTAAATGATGACGGGAAGTTTCTTCTTGCTGCACGTAAATGCAAGCGCCCCACCTGCACAGATTATGTTATCTCTCTGCATGCTGATGATTTGTCAAAAGGGAGCAGCACTTATGTAGGGAAGTTGAGATCTAATTTTCTAGGAACCAAGTTCACAATCTTTGATGGGCAACCACCACACGCTGGAGCCAGAATCGCCAAAAGTCGCTCCACTAGGCTTGTGAATTTGAAACAAGTTTCACCCAGAGTCCCTACAGGAAATTATCCAGTGGCCCACATTTCTTATGAATTAAATGTATTGGGATCGAGGGGTCCTAGGAGAATGCAGTGTATCATGGATGCTATTCCGGCCTCCGCAGTTGAACCTGGAGGAGTGGCTCCCACACAGACTGAGCTTTCCTGGAGCAATGTAGAAGTCTTCCCGTCATTCCCATTTCTACGATCAAAATCTAATCACACAGATAACTTCTTATCTGAACCACTTTCCAGTCAGAACGATGGAATGCTGTTACTGAGAAACAAAACCCCCAGGTGGCATGAGCAGCTTCAATGCTGGTGTCTGAACTTTCATGGAAGAGTCACAATTGCTTCGGTGAAAAACTTTCAATTGGTGGCTTCTCCAGAAAATGGACCAGCAGGACCAGAAAATGATAAGATCATCCTCCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCTTTATCCGATCTCTGCTTTCCAGGCTTTTGCAATGTGCCTCAGCAGCTTTGACACCAAGATTGCCTGTGAATGA 1164 46.05 MSLKSILQDMRSRSRRVVQDGSAAEPKDGLDQSCWANMPQELLREVLMKIEASENIWPPRKSVVACAGVCRSWRTITKEIVKTPEVSGRLTFPISVKQPGPRDDLMKCFIKRNRSTQTYYLFLSLTNTLNDDGKFLLAARKCKRPTCTDYVISLHADDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHAGARIAKSRSTRLVNLKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVEPGGVAPTQTELSWSNVEVFPSFPFLRSKSNHTDNFLSEPLSSQNDGMLLLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPENDKIILQFGKVGKDLFTMDYLYPISAFQAFAMCLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49522540 49524744 + evm.model.ptg000003l.131 HCH6g1661 547155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1661 387 FunFam Tubby-like F-box protein 92 387 - -
HCH6g1661 387 Pfam F-box domain 35 78 IPR001810 GO:0005515(InterPro)
HCH6g1661 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
HCH6g1661 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
HCH6g1661 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
HCH6g1661 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
HCH6g1661 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
HCH6g1661 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
HCH6g1661 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
HCH6g1661 387 SUPERFAMILY F-box domain 26 78 IPR036047 GO:0005515(InterPro)
HCH6g1661 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
HCH6g1661 387 CDD F-box_AtTLP-like 35 79 - -
HCH6g1661 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
HCH6g1661 387 Pfam Tub family 96 382 IPR000007 -
HCH6g1661 387 PANTHER TUBBY-RELATED 26 386 - -
HCH6g1661 387 MobiDBLite consensus disorder prediction 1 30 - -
HCH6g1661 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1661 K19600 - - csv:101203437 679.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1446 HCH-Chr12:39198182 HCH6g1661 HCH-Chr6:49522540 4.70E-122 dispersed
HCH13g0234 HCH-Chr13:1539533 HCH6g1661 HCH-Chr6:49522540 1.30E-119 dispersed
HCH6g0633 HCH-Chr6:38041089 HCH6g1661 HCH-Chr6:49522540 1.70E-99 dispersed
HCH6g1661 HCH-Chr6:49522540 HCH7g1132 HCH-Chr7:44085791 6.40E-179 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g1446 . 1 431 TUB Transcription Factor Family AT1G76900 72.5 3.3e-174 608.2
HCH11g0876 . 1 426 TUB Transcription Factor Family AT1G76900 69.9 3.2e-169 591.7
HCH13g0234 . 1 430 TUB Transcription Factor Family AT1G76900 72.1 3.2e-169 591.7
HCH6g1661 . 13 387 TUB Transcription Factor Family AT1G76900 50.5 5.5e-113 404.8
HCH11g0876 . 173 426 TUB Transcription Factor Family AT1G25280 73.5 5.9e-99 357.5
HCH12g1446 . 173 431 TUB Transcription Factor Family AT1G25280 68.8 8.9e-95 343.6
HCH13g0234 . 175 430 TUB Transcription Factor Family AT1G25280 67.8 9.5e-89 323.6
HCH6g1661 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 3.7e-69 258.5
HCH7g1132 . 158 395 TUB Transcription Factor Family AT1G25280 52.2 1.9e-68 256.1
HCH12g0183 . 188 422 TUB Transcription Factor Family AT1G25280 55.5 5.4e-68 254.6
HCH6g1661 . 98 387 TUB Transcription Factor Family AT5G18680 61.8 3.9e-99 358.2
HCH7g1132 . 100 395 TUB Transcription Factor Family AT5G18680 61.5 9.9e-95 343.6
HCH12g1446 . 112 431 TUB Transcription Factor Family AT5G18680 53.1 2.4e-85 312.4
HCH13g0234 . 112 430 TUB Transcription Factor Family AT5G18680 52.8 2.3e-83 305.8
HCH11g0876 . 112 426 TUB Transcription Factor Family AT5G18680 53.0 6.6e-83 304.3
HCH12g0183 . 125 422 TUB Transcription Factor Family AT5G18680 50.3 9.3e-77 283.9
HCH12g0183 . 1 422 TUB Transcription Factor Family AT2G18280 57.2 1.4e-125 446.4
HCH11g0876 . 1 426 TUB Transcription Factor Family AT2G18280 53.1 2.9e-118 422.2
HCH12g1446 . 1 431 TUB Transcription Factor Family AT2G18280 52.9 7.9e-116 414.1
HCH13g0234 . 1 430 TUB Transcription Factor Family AT2G18280 51.3 1.9e-114 409.5
HCH6g1661 . 1 387 TUB Transcription Factor Family AT2G18280 52.1 1.1e-112 403.7
HCH7g1132 . 1 395 TUB Transcription Factor Family AT2G18280 52.2 1.5e-111 399.8
HCH6g0633 . 47 379 TUB Transcription Factor Family AT2G18280 50.6 8.5e-94 340.9
HCH6g1661 . 1 387 TUB Transcription Factor Family AT2G47900 68.2 3.6e-164 574.7
HCH7g1132 . 1 395 TUB Transcription Factor Family AT2G47900 66.4 2.1e-156 548.9
HCH12g1446 . 1 431 TUB Transcription Factor Family AT2G47900 56.0 6.6e-134 474.2
HCH11g0876 . 1 426 TUB Transcription Factor Family AT2G47900 56.9 7.3e-133 470.7
HCH13g0234 . 1 430 TUB Transcription Factor Family AT2G47900 56.9 1.4e-131 466.5
HCH12g0183 . 1 422 TUB Transcription Factor Family AT2G47900 53.5 6.7e-118 421.0
HCH6g0633 . 47 379 TUB Transcription Factor Family AT2G47900 51.1 3.7e-100 362.1
HCH4g1250 . 93 308 TUB Transcription Factor Family AT1G16070 64.1 7.7e-76 280.8
HCH11g0876 . 65 426 TUB Transcription Factor Family AT1G43640 68.7 6.1e-147 517.3
HCH12g1446 . 67 431 TUB Transcription Factor Family AT1G43640 69.5 1.0e-146 516.5
HCH13g0234 . 65 430 TUB Transcription Factor Family AT1G43640 68.6 1.1e-143 506.5
HCH7g1132 . 51 395 TUB Transcription Factor Family AT1G43640 53.7 2.0e-105 379.4
HCH6g1661 . 47 387 TUB Transcription Factor Family AT1G43640 51.8 2.6e-105 379.0
HCH12g0183 . 31 422 TUB Transcription Factor Family AT1G47270 59.1 4.7e-129 458.0
HCH11g0876 . 1 426 TUB Transcription Factor Family AT1G47270 53.0 5.9e-116 414.5
HCH13g0234 . 48 430 TUB Transcription Factor Family AT1G47270 55.3 3.3e-114 408.7
HCH12g1446 . 30 431 TUB Transcription Factor Family AT1G47270 52.1 4.4e-111 398.3
HCH7g1132 . 1 395 TUB Transcription Factor Family AT1G47270 51.7 3.6e-105 378.6
HCH6g0633 . 45 379 TUB Transcription Factor Family AT1G53320 79.8 1.1e-159 559.7
HCH7g1132 . 35 395 TUB Transcription Factor Family AT1G53320 50.8 4.2e-98 355.1
HCH12g0183 . 64 422 TUB Transcription Factor Family AT1G53320 51.3 3.3e-95 345.5
HCH6g1661 . 98 387 TUB Transcription Factor Family AT3G06380 62.8 2.1e-97 352.4
HCH7g1132 . 100 395 TUB Transcription Factor Family AT3G06380 63.0 1.6e-94 342.8
HCH11g0876 . 116 426 TUB Transcription Factor Family AT3G06380 54.3 3.8e-83 305.1
HCH12g1446 . 116 431 TUB Transcription Factor Family AT3G06380 52.1 8.7e-80 293.9
HCH13g0234 . 116 430 TUB Transcription Factor Family AT3G06380 51.7 1.1e-79 293.5
HCH12g0183 . 129 422 TUB Transcription Factor Family AT3G06380 53.1 3.1e-77 285.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002294 1 2 1 1 2 2 3 2 2 2 2 2 4 1 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33796 PF01167 Tub 5.60E-110 CL0395 HCH TF