Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1661 ATGTCTCTAAAGAGTATACTCCAAGATATGAGGTCACGTTCGCGCCGCGTGGTCCAGGACGGCTCGGCGGCGGAGCCGAAAGACGGTCTTGACCAAAGTTGCTGGGCCAATATGCCTCAAGAGCTTCTTAGAGAAGTTTTGATGAAAATTGAGGCATCGGAGAATATTTGGCCGCCGAGAAAAAGCGTCGTCGCTTGTGCCGGAGTTTGCCGGAGTTGGAGGACGATTACTAAAGAGATCGTCAAAACTCCTGAGGTTTCCGGCAGGTTGACGTTTCCGATCTCTGTTAAGCAGCCGGGTCCAAGGGATGATCTTATGAAGTGTTTCATAAAACGGAACAGATCTACTCAAACTTATTATCTTTTCCTTAGTTTGACCAACACGCTAAATGATGACGGGAAGTTTCTTCTTGCTGCACGTAAATGCAAGCGCCCCACCTGCACAGATTATGTTATCTCTCTGCATGCTGATGATTTGTCAAAAGGGAGCAGCACTTATGTAGGGAAGTTGAGATCTAATTTTCTAGGAACCAAGTTCACAATCTTTGATGGGCAACCACCACACGCTGGAGCCAGAATCGCCAAAAGTCGCTCCACTAGGCTTGTGAATTTGAAACAAGTTTCACCCAGAGTCCCTACAGGAAATTATCCAGTGGCCCACATTTCTTATGAATTAAATGTATTGGGATCGAGGGGTCCTAGGAGAATGCAGTGTATCATGGATGCTATTCCGGCCTCCGCAGTTGAACCTGGAGGAGTGGCTCCCACACAGACTGAGCTTTCCTGGAGCAATGTAGAAGTCTTCCCGTCATTCCCATTTCTACGATCAAAATCTAATCACACAGATAACTTCTTATCTGAACCACTTTCCAGTCAGAACGATGGAATGCTGTTACTGAGAAACAAAACCCCCAGGTGGCATGAGCAGCTTCAATGCTGGTGTCTGAACTTTCATGGAAGAGTCACAATTGCTTCGGTGAAAAACTTTCAATTGGTGGCTTCTCCAGAAAATGGACCAGCAGGACCAGAAAATGATAAGATCATCCTCCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCTTTATCCGATCTCTGCTTTCCAGGCTTTTGCAATGTGCCTCAGCAGCTTTGACACCAAGATTGCCTGTGAATGA 1164 46.05 MSLKSILQDMRSRSRRVVQDGSAAEPKDGLDQSCWANMPQELLREVLMKIEASENIWPPRKSVVACAGVCRSWRTITKEIVKTPEVSGRLTFPISVKQPGPRDDLMKCFIKRNRSTQTYYLFLSLTNTLNDDGKFLLAARKCKRPTCTDYVISLHADDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHAGARIAKSRSTRLVNLKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVEPGGVAPTQTELSWSNVEVFPSFPFLRSKSNHTDNFLSEPLSSQNDGMLLLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPENDKIILQFGKVGKDLFTMDYLYPISAFQAFAMCLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49522540 49524744 + evm.model.ptg000003l.131 HCH6g1661 547155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1661 387 FunFam Tubby-like F-box protein 92 387 - -
HCH6g1661 387 Pfam F-box domain 35 78 IPR001810 GO:0005515(InterPro)
HCH6g1661 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
HCH6g1661 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
HCH6g1661 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
HCH6g1661 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
HCH6g1661 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
HCH6g1661 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
HCH6g1661 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
HCH6g1661 387 SUPERFAMILY F-box domain 26 78 IPR036047 GO:0005515(InterPro)
HCH6g1661 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
HCH6g1661 387 CDD F-box_AtTLP-like 35 79 - -
HCH6g1661 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
HCH6g1661 387 Pfam Tub family 96 382 IPR000007 -
HCH6g1661 387 PANTHER TUBBY-RELATED 26 386 - -
HCH6g1661 387 MobiDBLite consensus disorder prediction 1 30 - -
HCH6g1661 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1446 HCH-Chr12:39198182 HCH6g1661 HCH-Chr6:49522540 4.70E-122 dispersed
HCH13g0234 HCH-Chr13:1539533 HCH6g1661 HCH-Chr6:49522540 1.30E-119 dispersed
HCH6g0633 HCH-Chr6:38041089 HCH6g1661 HCH-Chr6:49522540 1.70E-99 dispersed
HCH6g1661 HCH-Chr6:49522540 HCH7g1132 HCH-Chr7:44085791 6.40E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33796 PF01167 Tub 5.60E-110 CL0395 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1661 K19600 - csv:101203437 679.478