Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1669 ATGGGTGGGTGTTTTCCTTGTCTGGGATCATCTCAAAAGGAGAGAGATGATGCTTTGGAAGAAATGTCTCAGAAAGATTCAGTGAAGGATGGTTCAATTTCTCAGTCTCACTCCATTCATAGACTTAATTCTGACAAATCAAAACCAAAGAGTGTATCTGAATCTAAGAAGGAAACAAGCATTCCAAAAAATGGACCAACAGAAAACATTGCCGTGAAAACATTTACTTTTAGAGAGCTTGCTGCAGCCACTAAAAATTTTAGGCCAGAATGTTTGTTGGGTGAAGGAGGTTTTGGACGTGTTTACAAGGGTCGCCTGGAGAGCACAGGACAGGTAGTAGCAGTTAAACAGCTTGATCGTAATGGCCTTCAGGGAAATCGAGAATTCTTGGTTGAAGTTTTAATGCTTAGCCTCTTACACCACCCAAATCTTGTCAATTTGATAGGTTATTGTGCCGATGGGGATCAACGACTCCTTGTTTATGAATTCTTGCCGTTGGGATCCTTGGAGGACCATTTACATGATCTGCCACCTGATAGGGAATCCCTTGATTGGAGCACAAGAATGAAGATTGCAGCTGGTGCAGCTAAGGGGTTGGAATATTTGCATGATAAAGCAAACCCTCCAGTTATATATAGAGACTTAAAGTCATCAAACATTCTTCTTGATGAAGGATATCACCCTAAGCTATCAGATTTTGGTCTTGCAAAATTGGGTCCTGTCGGTGATAAGACTCATGTCTCAACACGAGTGATGGGAACATATGGTTATTGTGCTCCAGAGTATGCAATGACTGGTCAACTCACTTTAAAATCCGATGTCTATAGTTTTGGTGTTGTCTTACTAGAACTGATCACTGGGCGTAAGGCTATTGATAATACTCGCAGTCACGGAGAACACAATCTAGTTGCATGGGCTCGGCCACTTTTCAGGGATCGTCGAAAGTTTCCAAAAATGGCTGATCCCCTGCTTCAAGGCCGTTATCCGATGCGAGGACTGTATCAGGCTCTAGCAGTGGCTGCAATGTGTTTGCAAGAACAAGCTGCAACAAGACCGCTAATTGGTGATGTTGTCACAGCCCTCACATATTTAGCCTCCCAATCATTTGATCCAAATGCAAATTCAGCTTCTCTAAGCAACAGAGTTGGTCCATCAGCTCCTAGGAGCAAAGACGAATGTCAAGGTTTAGGAGATGGGCTGAATAGCCCTGCCGGGCATGGACGTGGTAGACAACATGGCTCCCCTTCATCCCATAGAAATTCACCTGAAGTTAGGAAAAGAGACGAAAAACCATTGAGCAGAACAGATACAGATAGCTGGTCTGCTAGAAAATGGCACTTCGATGACTTGGACCGGCATGAAAACCAAAGTGAAAGTCCTGTAAATACCGGTAGAGGAAGGGAAACTCCCAGGAATCGCGACATAAACAGAGAACGAGCAGTGGCTGAGGCCCGAGTATGGGGTGAAAATTGGAGGGAAAGGAAGAGGGCAGATGCTGTCGATAGCTAA 1509 44.14 MGGCFPCLGSSQKERDDALEEMSQKDSVKDGSISQSHSIHRLNSDKSKPKSVSESKKETSIPKNGPTENIAVKTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFLPLGSLEDHLHDLPPDRESLDWSTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLELITGRKAIDNTRSHGEHNLVAWARPLFRDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQSFDPNANSASLSNRVGPSAPRSKDECQGLGDGLNSPAGHGRGRQHGSPSSHRNSPEVRKRDEKPLSRTDTDSWSARKWHFDDLDRHENQSESPVNTGRGRETPRNRDINRERAVAEARVWGENWRERKRADAVDS 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49554733 49557699 - evm.model.ptg000003l.123 HCH6g1669 547163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1669 502 MobiDBLite consensus disorder prediction 1 67 - -
HCH6g1669 502 MobiDBLite consensus disorder prediction 13 27 - -
HCH6g1669 502 ProSiteProfiles Protein kinase domain profile. 87 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1669 502 FunFam Serine/threonine-protein kinase PBS1 60 163 - -
HCH6g1669 502 FunFam Serine/threonine-protein kinase PBS1 164 379 - -
HCH6g1669 502 MobiDBLite consensus disorder prediction 419 458 - -
HCH6g1669 502 Gene3D Phosphorylase Kinase; domain 1 56 163 - -
HCH6g1669 502 PANTHER OS07G0668900 PROTEIN 44 379 - -
HCH6g1669 502 SMART serkin_6 87 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1669 502 MobiDBLite consensus disorder prediction 41 57 - -
HCH6g1669 502 Gene3D Transferase(Phosphotransferase) domain 1 164 380 - -
HCH6g1669 502 MobiDBLite consensus disorder prediction 372 477 - -
HCH6g1669 502 SUPERFAMILY Protein kinase-like (PK-like) 69 361 IPR011009 -
HCH6g1669 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g1669 502 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524(InterPro)
HCH6g1669 502 CDD STKc_IRAK 93 362 - -
HCH6g1669 502 Pfam Protein kinase domain 92 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0089 HCH-Chr10:834036 HCH6g1669 HCH-Chr6:49554733 1.30E-170 dispersed
HCH1g0516 HCH-Chr1:54013798 HCH6g1669 HCH-Chr6:49554733 1.10E-159 dispersed
HCH3g1290 HCH-Chr3:49108702 HCH6g1669 HCH-Chr6:49554733 5.50E-141 dispersed
HCH6g0781 HCH-Chr6:42595380 HCH6g1669 HCH-Chr6:49554733 4.80E-137 dispersed
HCH6g1669 HCH-Chr6:49554733 HCH8g0231 HCH-Chr8:10383003 1.80E-125 dispersed
HCH6g1669 HCH-Chr6:49554733 HCH7g1120 HCH-Chr7:43960087 5.00E-232 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81607 PF00069 Pkinase 1.50E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1669 - - - 0.0