Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH6g1674 | ATGGAGCGTGTCAGTTCCGGGTCCGTGTCAGGATCCGATCCGCCTCAAGACCGGACGGGTTCGGGACCTGTATCAGGGCTAGAGCTCGAGGAAGCTTTATGGCCATTGGGACTGGAAGGAGAGGAGTCTTATCCCGAAAGATCTGAAGAGCCTGATTGTATATACTATTTACGTACTGGGTTTTGTGGGTATGGTGCTCGGTGTCGGTTCAATCATCCCCGCTCCCGGCCTGTGATCGCGGGAGCTGCGAGACCTGGCGGAGGACAGCAATCGGAGAGAACGGGCCAGCCTGTATGTCAGTACTATGCGAGGACGGGGACTTGTAAGTTTGGGGCTTCTTGCAAGTATTACCACCCAAGGCAAGGAGGAGATTCTGTTAGCCCTGTATCACTGAATTATTATGGATACCCATTACGGCTGGGTCAGAAAGACTGTTCTTATTACGTGAAAAGTGGACGTTGTAAATTTGGGGAAACATGTAAATTCAACCATCCAGAGCCAGTGGGCATACAACTTCCGGCACAATCACCACCTCCGCAGGCTTCACCGATGTCTGCACCCATAATCTACCCCCCTGTTCAGTCTCCATCTGCTTCCCCGATGCAACATTATGGTGTAGTAGTTGCCAGGCCACCTATACTGCCAAGTTCATACATCCAGAGTGCTTATGGTCCGTGGCTACTCTCCCCAGGAATGGTTCCTTTCTCTGGCTGGAGTCCATACCCGGCATCTGTTAGCCCAGGAGCCTCTCCCAGTACTCAACCTTCCGTTGGTTCAGGGCCGTTTTACGGAATCACTCAACTTAATCCTTCTGCACCTGTATATACAGGATCACATCAGACTAGATCTTCCCTTAGTTCATCCATTGGACCCCAGGTGGAACATTCCTTTCCACAAAGGCCTGGTCAACCAGTGTGTCAGTATTATTTGAGAAAGGGGGATTGTAAATTTGGATCATCTTGTAAATATCATCATCCTGCTGAATTGATTGCACCAAAAGGAAATGTTGTGCTTAGCCCTTTGGGTTTTCCTCTGCGTCCGGGGGCACCACTGTGTAATCATTTTGCACAACATGGAGTATGTAAGTATGGTCTCGCATGCAAGTTTGACCATCCAATGGGAACTCTAAGTTACAGTCCTTCAGCATCTTCTCTTGCTGATATGCCTGTTGCACCTTATCCTGTGGGTTCATCAATGGCTACCCTTGCCCCATCTTCCTCATCTTCAGAGTTGCAGAATGAACATGCTTTAGGATTCACTAAGGATTCTAACTTCACCAGAATGTCGTCGTCGATGACTACATCTACTACATCAGTTGGTTCCATTACATCTACAAGTGGATCAATTTCTCAATCTGGTGTTGATCAGTCCTTTCAGAAAGCAGGCCAATCGATCAGGACCACTGCAACCATCTCCAGAAGCACGGAAGCCAGTATCTAA | 1440 | 48.61 | MERVSSGSVSGSDPPQDRTGSGPVSGLELEEALWPLGLEGEESYPERSEEPDCIYYLRTGFCGYGARCRFNHPRSRPVIAGAARPGGGQQSERTGQPVCQYYARTGTCKFGASCKYYHPRQGGDSVSPVSLNYYGYPLRLGQKDCSYYVKSGRCKFGETCKFNHPEPVGIQLPAQSPPPQASPMSAPIIYPPVQSPSASPMQHYGVVVARPPILPSSYIQSAYGPWLLSPGMVPFSGWSPYPASVSPGASPSTQPSVGSGPFYGITQLNPSAPVYTGSHQTRSSLSSSIGPQVEHSFPQRPGQPVCQYYLRKGDCKFGSSCKYHHPAELIAPKGNVVLSPLGFPLRPGAPLCNHFAQHGVCKYGLACKFDHPMGTLSYSPSASSLADMPVAPYPVGSSMATLAPSSSSSELQNEHALGFTKDSNFTRMSSSMTTSTTSVGSITSTSGSISQSGVDQSFQKAGQSIRTTATISRSTEASI | 479 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 49580153 | 49582754 | - | evm.model.ptg000003l.118 | HCH6g1674 | 547168 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH6g1674 | 479 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| HCH6g1674 | 479 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 348 | 373 | IPR000571 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 301 | 326 | IPR000571 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 142 | 166 | IPR000571 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 50 | 74 | IPR000571 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 95 | 120 | IPR000571 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | ProSiteProfiles | Zinc finger C3H1-type profile. | 93 | 121 | IPR000571 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | ProSiteProfiles | Zinc finger C3H1-type profile. | 47 | 75 | IPR000571 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | PANTHER | PROTEIN PHOSPHATASE RELATED | 41 | 374 | IPR050974 | GO:0003729(PANTHER) | |
| HCH6g1674 | 479 | MobiDBLite | consensus disorder prediction | 274 | 294 | - | - | |
| HCH6g1674 | 479 | ProSiteProfiles | Zinc finger C3H1-type profile. | 139 | 167 | IPR000571 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | SUPERFAMILY | CCCH zinc finger | 303 | 328 | IPR036855 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | ProSiteProfiles | Zinc finger C3H1-type profile. | 300 | 328 | IPR000571 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | SMART | c3hfinal6 | 47 | 74 | IPR000571 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | SMART | c3hfinal6 | 300 | 327 | IPR000571 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | SMART | c3hfinal6 | 93 | 120 | IPR000571 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | SMART | c3hfinal6 | 139 | 166 | IPR000571 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | SMART | c3hfinal6 | 346 | 373 | IPR000571 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | MobiDBLite | consensus disorder prediction | 274 | 300 | - | - | |
| HCH6g1674 | 479 | Gene3D | - | 124 | 174 | - | - | |
| HCH6g1674 | 479 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| HCH6g1674 | 479 | SUPERFAMILY | CCCH zinc finger | 344 | 372 | IPR036855 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | SUPERFAMILY | CCCH zinc finger | 96 | 121 | IPR036855 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | Gene3D | - | 43 | 123 | - | - | |
| HCH6g1674 | 479 | Gene3D | - | 298 | 385 | - | - | |
| HCH6g1674 | 479 | ProSiteProfiles | Zinc finger C3H1-type profile. | 346 | 374 | IPR000571 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | SUPERFAMILY | CCCH zinc finger | 140 | 166 | IPR036855 | GO:0046872(InterPro) | |
| HCH6g1674 | 479 | SUPERFAMILY | CCCH zinc finger | 50 | 75 | IPR036855 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH6g1674 | HCH-Chr6:49580153 | HCH8g0268 | HCH-Chr8:14505171 | 1.80E-21 | dispersed | |
| HCH6g1674 | HCH-Chr6:49580153 | HCH7g1110 | HCH-Chr7:43765982 | 5.10E-93 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33798 | PF00642 | zf-CCCH | 1.10E-08 | CL0537 | HCH | TF |
Pathway information