Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1699 ATGTTCGGTGCGGAGAATTTCCGATTCCCATTTTGCGTAGAATCTGTATCCGTCCGTCGCCTTTCTTTCTCCTGCTACGGTAATATCGCGATGATAATTTCATGGATTTATGGCATGAGAGAGTATAAAATTGAGGTTTTTGCTGCTTGTGATTTTTTACCTTTAGGCTTTAGGTTTTTTTTTCATTTTGAGCTGACAGCCAAGAGATACTTTAATCCTCTCCAAGAAAATACCTTAAGAACAGCCAAGATGTCACGAAAAGGTTTGATGGAACAAGATTTAAGTAAGTTAGATGTGACTCAGTTACATCCACTGTCTCCGGAAGTTATATCACGTCAAGCGACAATTAATATCGGCACTATTGGTCATGTGGCTCATGGAAAGTCCACTGTTGTGAAAGCAATATCTGGTGTTCAGACTGTTCGGTTTAAAAATGAGTTGGAGCGTAACATTACCATTAAGCTTGGATATGCTAATGCAAAGATATTCAAATGTGAAGATGATCGATGCCCTCGACCTATGTCCTACAAGGCATATGGAAGTGGGAAGGAAGACAGTCCATTGTGCGATGTGCCTGGATATGAAAATTGCAGGATGAAATTGCTGAGACATGTTTCATTTGTCGATTGCCCTGGTCATGATATTCTCATGGCTACTATGCTTAATGGAGCTGCAATTATGGATGGTGCATTACTTCTTATAGCTGCCAATGAAAGCTGTCCCCAGCCTCAAACTTCTGAACATCTTGCTGCCGTGGAAATTATGCGCCTGCAACATATTATTATCCTTCAAAATAAAGTTGACCTTATCCAGGAAAATGTTGCCATCAATCAGCATGAAGCCATTCAAAATTTTATCAAAGGAACTGTTGCCGACAGTGCACCTGTTGTACCAATTTCTGCACAGTTGAAGTATAATATTGATGTTGTGTGTGAATACATTGTGAAAAAAATTCCCATTCCGGAGAGAAATTTTGTCTCACCTCCAAATATGATTGTGATTCGGTCTTTTGATGTCAATAAACCTGGATTTGAGGTTGATGAAATAAAGGGAGGTGTAGCTGGTGGAAGTATCTTAAGGGGTGTTTTGAAGGTGAACCAATTTATTGAAGTTCGTCCTGGGATTGTTGTTAAAGATGAAAATGGAAACATCAAATGCACTCCAATATATTCAAGAATCGTTTCTTTATATGCTGAGCAAAATGAACTGCAATTTGCTGTTCCTGGAGGTCTAATTGGGGTTGGCACAACCATGGATCCCACTTTGACACGTGCTGATAGGTTGGTCGGTCAGGTTCTTGGTGAGGTTGGGTCACTCCCTGAGGTTTTTGTTGAGCTAGAGGTTAATTTCTTCCTGCTGCGACGGCTTCTTGGTGTAAGAACAAAGGGCTCCGAGAGGCAAGGCAAAGTTTCAAAGCTAACCAAGACGGAGATCTTAATGTTGAACATAGGATCCATGTCAACTGGAGCTCGAGTACTCGCTGTTAAGAATGATCTGGCGAAGTTGCAACTCACTGCTCCAGTTTGCACCAGCAAAGGGGAGAAGATTGCTCTCAGTCGGCGTGTCGAAAAGCATTGGCGTCTTATTGGCTGGGGCCAGATTCAAGCTGGAACCACCCTCGAAGTACCCCCCAGCCCCCAATTGAGTTAA 1650 42.0 MFGAENFRFPFCVESVSVRRLSFSCYGNIAMIISWIYGMREYKIEVFAACDFLPLGFRFFFHFELTAKRYFNPLQENTLRTAKMSRKGLMEQDLSKLDVTQLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIFKCEDDRCPRPMSYKAYGSGKEDSPLCDVPGYENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQNFIKGTVADSAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDENGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLTKTEILMLNIGSMSTGARVLAVKNDLAKLQLTAPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGTTLEVPPSPQLS 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49725597 49728946 - evm.model.ptg000003l.93 HCH6g1699 547193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1699 549 CDD eIF2_gamma_II 324 437 IPR044127 GO:0000049(InterPro)
HCH6g1699 549 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 87 543 IPR050543 GO:0000049(PANTHER)|GO:0001731(PANTHER)|GO:0003743(PANTHER)|GO:0005829(PANTHER)|GO:0005850(PANTHER)
HCH6g1699 549 Gene3D Translation factors 440 539 - -
HCH6g1699 549 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 113 322 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g1699 549 Pfam Initiation factor eIF2 gamma, C terminal 445 534 IPR015256 -
HCH6g1699 549 CDD eIF2_gamma_III 440 534 IPR015256 -
HCH6g1699 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 325 IPR027417 -
HCH6g1699 549 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 438 535 IPR009001 -
HCH6g1699 549 Gene3D Translation factors 325 439 - -
HCH6g1699 549 FunFam Eukaryotic translation initiation factor 2 subunit gamma 324 439 - -
HCH6g1699 549 Pfam Elongation factor Tu domain 2 351 433 IPR004161 GO:0005525(InterPro)
HCH6g1699 549 SUPERFAMILY Translation proteins 323 437 IPR009000 -
HCH6g1699 549 Gene3D - 113 323 IPR027417 -
HCH6g1699 549 Pfam Elongation factor Tu GTP binding domain 115 319 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g1699 549 FunFam Eukaryotic translation initiation factor 2 subunit gamma 113 323 - -
HCH6g1699 549 PRINTS GTP-binding elongation factor signature 206 216 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g1699 549 PRINTS GTP-binding elongation factor signature 260 269 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g1699 549 PRINTS GTP-binding elongation factor signature 222 233 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g1699 549 PRINTS GTP-binding elongation factor signature 117 130 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g1699 549 CDD eIF2_gamma 116 323 IPR044128 GO:0005525(InterPro)
HCH6g1699 549 FunFam Eukaryotic translation initiation factor 2 subunit gamma 440 539 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0943 HCH-Chr4:6045768 HCH6g1699 HCH-Chr6:49725597 1.40E-15 transposed
HCH8g1431 HCH-Chr8:48895181 HCH6g1699 HCH-Chr6:49725597 4.30E-15 transposed
HCH9g1165 HCH-Chr9:17149079 HCH6g1699 HCH-Chr6:49725597 3.10E-15 transposed
HCH6g1699 HCH-Chr6:49725597 HCH7g1074 HCH-Chr7:42942338 1.20E-255 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1699 K03242 - vvi:100252857 881.708