Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1710 ATGTCTAACGGTGGATTTGCTAATGCCGATGGTGACCGGAAAAAGAAGAAGATCGCTGTTATCTCCGTGTCTTCTCTTATTCTCGTAGCCATGGTTGTTGCCGTGACTGTTGGTGTCAGCGGCGGAGACCATGCAGAGCACGATACCGGTAAAGCTCCGGCTGCTGGAGAAGTTTCGACCACATCGAAAGCGATCAAAGCCATTTGCCATCCTACTGATTTCAAAGAAACTTGTGAGGAGAGCCTCAAGAAGGAAGCTGGAAACGCCAGCGACCCTAGAGACCTAATTAGGGCTGGATTCAAGATAGCAAAGGACCAATTAGCCGGTGCAATAAGAAACTCCGCCACGTTGAAAGAGCTAGCCAAGGATTCAAGAACCAACCAGGCTCTTGAGAATTGTAAGGAGCTCATCGAATACGCCATCGACGATATCGATGAATCTTTCACCAAAATCGGCGCTTTCGACATGAGTAAACTCGACGAGTTCGTCGATGATCTCAAGATTTGGCTCAGCGGTGCCTTGACATACGAACAGACATGTCTTGATGGATTCGAAAACACGACAGGTGATGCCGGGGACAAGATGAAATCCTTCTTGAAGACTTCACAGCAATTGACGAGCAATGGCCTTGCTATGGTGTCTGAAATCTCCACCCTCATAGGCTCTCTTCAGATTCCTGGAGTGAACCGAAGACTCTTGTCGGATGATGATGATACGCCGTCGTGGGTGAGTGAAAGCCGAAGGAAGCTTCTTCATGCAGCTCCGGAGAACATTAAGCCAAATGTCATTGTCGCCAAGGATGGAACTGGAAATTACAAGACAATCAACGAAGCTCTTCTTGATGTACCCAAAAATAGCAATATCACATTTGTTATTTATGTCAAAGAGGGTGTTTATGATGAAATTGTCATCATTCAAAAGTATATGAGTTATGTCATGATGTACGGAGACGGCCCTACCAAGACCGTTGTCACGGGTAACCGAAACTTCGTAGACGGCATCCAAACCTTCAAGACTGCCACTTTTTCCGTTATTGGATCGAACTTTATCGGCAAAAACATGGGATTCGTGAACACGGCCGGGCCGGAAAAACACCAAGCAGTAGCACTCCGTGTCCAATCCGACATGTCAATCTTCTACAACTGTCATATGGATGCTTACCAAGACACCCTCTACGCCCATGCTCATCGCCAATTCTACCGTGACTGCTCCGTCAGCGGCACAATCGATTTCATCTTCGGCAACGCCGCGGCCGTCTTCCAAAACTGCAAAATCATAGTGAGGAAGCCACTAGAAAACCAAAACTGCATTGTGACAGCCCAAGGAAGGTTAAACAGACGTGAACCAACAGCCCTTATCCTCCAAAACTGCACCATCACCGGCGACGCAGCTTACTTACCAGTGAAGGATATAAACAAGGCATATCTTGGAAGGCCATGGAAGGAATATTCAAGAACAATCATCATGCAATCAGATATCGGTGATGTAATTCAACCGGAAGGATGGTTGCCATGGATGGGAACTTTTGGTTTAAATACTTTGTTTTACACGGAGTTTGATAATAGAGGTCCTGGTGCCGTACAGACTCAGAGAGTTTTATGGAGAGGTATCAAGAAGTTGACGCAGCAACATGTTCTCCAATACACCGCTGGTCCATTTATTCAGGGAGATTCTTGGATCAAACCCACTGGAATTCCATACGTTTCTGGAATGATGAACTTGTAA 1725 46.26 MSNGGFANADGDRKKKKIAVISVSSLILVAMVVAVTVGVSGGDHAEHDTGKAPAAGEVSTTSKAIKAICHPTDFKETCEESLKKEAGNASDPRDLIRAGFKIAKDQLAGAIRNSATLKELAKDSRTNQALENCKELIEYAIDDIDESFTKIGAFDMSKLDEFVDDLKIWLSGALTYEQTCLDGFENTTGDAGDKMKSFLKTSQQLTSNGLAMVSEISTLIGSLQIPGVNRRLLSDDDDTPSWVSESRRKLLHAAPENIKPNVIVAKDGTGNYKTINEALLDVPKNSNITFVIYVKEGVYDEIVIIQKYMSYVMMYGDGPTKTVVTGNRNFVDGIQTFKTATFSVIGSNFIGKNMGFVNTAGPEKHQAVALRVQSDMSIFYNCHMDAYQDTLYAHAHRQFYRDCSVSGTIDFIFGNAAAVFQNCKIIVRKPLENQNCIVTAQGRLNRREPTALILQNCTITGDAAYLPVKDINKAYLGRPWKEYSRTIIMQSDIGDVIQPEGWLPWMGTFGLNTLFYTEFDNRGPGAVQTQRVLWRGIKKLTQQHVLQYTAGPFIQGDSWIKPTGIPYVSGMMNL 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49794629 49796539 - evm.model.ptg000003l.82 HCH6g1710 547204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1710 574 FunFam Pectinesterase 61 217 - -
HCH6g1710 574 CDD PMEI-like_3 67 218 - -
HCH6g1710 574 Gene3D - 255 571 IPR012334 -
HCH6g1710 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 217 IPR035513 -
HCH6g1710 574 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
HCH6g1710 574 PANTHER PECTINESTERASE 16 562 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH6g1710 574 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
HCH6g1710 574 FunFam Pectinesterase 255 571 - -
HCH6g1710 574 SUPERFAMILY Pectin lyase-like 258 570 IPR011050 -
HCH6g1710 574 Pfam Pectinesterase 261 557 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH6g1710 574 NCBIfam pectinesterase inhibitor domain 58 214 IPR006501 GO:0004857(InterPro)
HCH6g1710 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 216 IPR035513 -
HCH6g1710 574 SMART PMEI_2 60 212 IPR006501 GO:0004857(InterPro)
HCH6g1710 574 Pfam Plant invertase/pectin methylesterase inhibitor 63 212 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0171 HCH-Chr1:13321601 HCH6g1710 HCH-Chr6:49794629 1.20E-136 dispersed
HCH3g0862 HCH-Chr3:6805748 HCH6g1710 HCH-Chr6:49794629 6.60E-116 dispersed
HCH6g0035 HCH-Chr6:490211 HCH6g1710 HCH-Chr6:49794629 8.50E-111 dispersed
HCH6g1710 HCH-Chr6:49794629 HCH7g1061 HCH-Chr7:42705628 2.50E-227 dispersed
HCH4g1042 HCH-Chr4:6698670 HCH6g1710 HCH-Chr6:49794629 1.10E-107 wgd
HCH6g1710 HCH-Chr6:49794629 HCH7g1060 HCH-Chr7:42694465 1.80E-230 wgd
HCH6g1710 HCH-Chr6:49794629 HCH8g0081 HCH-Chr8:3954616 3.60E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1710 K01051 - csv:101221958 793.497