Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1716 ATGATGGGATCAGAGCAGTTGATGGGCGGAGGTGGACCACGTTATGTTCAAATGCAATCGGATCCTCCCACTCCTCCTCCTCTTCCTTCGTCTTCAATGACCTCATTTTTCTCTTTCCATCAAGGCGCCCCTGAGCCTACTCGTATTTTCGATGAGTTACCCAAAGCCTCCATCGTCTCCGTCTCCCGCCCCGATGCCGGCGATATCAGTCCCATGCTTCTTTCTTACACAATTGAGTTCCACTATAAGCAGTTTAAATGGCGCTTGTTGAAGAAAGCTTCACATGTGTTCTATTTGCACTTCGCATTAAAGAAACGTGCATTTATCGAGGAAATTCACGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGGGATCAAACGACAGTTGTCCAAGATGAAGACGAGCAAGATGATGAGGCTGTTCCACTGCATCATGATGAAAGTTCTAAAAATAGGGATGTTCCATCTAGTGCTGCGCTGCCCATTATTCGGCCTGCCTTGGGAAGACAACACTCTATGTCCGATAGAGCTATGACTGCTATGCAAGGGTATCTGAATCACTTCTTGGGTAACATGGATATTGTTAACTCTCGAGAGGTTTGCAGGTTTTTGGAGGTTTCAAAGTTATCATTTTCACCAGAATATGGCCCCAAGTTGAAAGAAGATTATGTCATGGTGAAGCATCTACCAAAAATAGCGAAGGATGATGATTCTAGAAGATGCTGTGCATGCCTGTGGTTTGGTTGTTGCAATGACAACTGGCAGAAGGTGTGGGCTGTATTAAAACCTGGATTTTTGGCCTTGTTGGGAGATCCTTTTGATACTCAACCGTTGGATTTAATAGTGTTTGATGTGCTACCTACTTCTGATGGCAATGGAGATGGACGAGTATCATTAGCTATGGAAATTAAGGAACGGAATCCATTACGACATTCATATAAGGTGACTTGTGGAAGTAGAAGTATTAGGTTAAGGGCAAAGAGTGGAGCTAAGGTTAAAGACTGGGTTGCTGCAATTAATGATGCTGGACTGAGGCCTCCTGAAGGTTGGTGTCATCCTCACCGTTTTGGTTCTTTTGCTCCTCCAAGGGGTTTGATTGAAGATGGTAGTAAGGCTCAGTGGTTCGTAGATGGTCAAGCAGCTTTTGAAGCTATTGCTTCTTCCATTGAACGTGCAAAATCTGAGATTTTCATTTGTGGTTGGTGGCTTTGCCCAGAATTGTATTTACGACGGCCTTTTAATACACATACTTCAGCTAGGCTTGATGCTTTACTTGAAGCAAAAGCTAGAGAAGGGGTTCAGATATACATTCTTCTCTATAAAGAGGTTGCCCTTGCGTTAAAAATTAACAGTGTTTACAGCAAGAGAAAACTTCTTGGCATCCATGAAAATGTGAGAGTACTCCGGTACCCTGACCACTTCTCTAGTGGAGTGTACTTATGGTCCCACCATGAAAAACTTGTCATTATTGATTATCAGATTTGCTTTATTGGAGGATTGGATTTATGCTTTGGTCGTTATGATACACCAGAACATAGAGTTGGTGATTGTCCTCCTTCAGTATGGCCTGGAAAGGACTACTATAATCCAAGGGAATCTGAGCCGAATTCATGGGAAGATACCATGAAAGATGAGTTGGATCGTCGCAAATATCCTCGTATGCCTTGGCATGACGTCCACTGTGCACTTTGGGGACCACCGTGTCGTGACATAGCCAGACATTTTGTCCAACGATGGAATTATGCCAAGAGAAATAAAGCCCCAAATGAGCAGGCAATTCCACTACTTATGCCTCAGCACCATATGGTTATTCCACATTACTTGGGGAATAGCAGAGAGTTGGAGGTTGAAAATAAGAATCTTGACAATTCTAAGGAAACTAAAGGACAGGATTCTTTTTCTCAACGATCATCTTTTCAAGATATTCCTTTGCTTCTGCCTCAAGAGGCTGATAGTCAGGATGCTCAAATTGAAGGCCCAAAAGTTAATGGTGTGGAGCCTATCGTTAATTCCCTTGATCAGCCAAGTAAGATCAGCAGTGGTCTCTCTTTCTCTTTCAGGAAGGTCAAAGTTGAACCTGTAGGACCAGATATGCCACTAAAAGGGTTTGTTGACGATCTTGACAATTTGGATTATCATGGAAAACTGTCTGGAGATGGGATAACACAGCATGGTGGTAAAAGTTCAGATTTGGAGTGGTGGGAAACACAAGATAGGGAACATCATGGTGGCTTCATAGATGAATCTGGGCAAGTAGGTCCATGTGCTTCGTGTCGCTGCCAGGTAATCAGAAGTGTCAGTCAGTGGTCTGCTGGGACAAGCCAAACGGAAGAGAGCATTCACGTTGCATATTGCTCTCTGATTGAGAAAGCAGAACATTTTATCTATATTGAGAATCAATTTTTTATATCAGGTCTCGCAGGAGATGACATAATACGGAATCGTGTGTTAGAAGCATTATACCGCCGCATAATGAGAGCCTACCGTGAAAAGAAGAGTTTTAGGGTTATTATTGTCATACCACTCTTACCTGGATTTCAGGGGGGGCTGGATGACAGTGGTGCAGCATCAGTTAGAGCTATAATGCATTGGCAGTATCGAACCATATGTAGAGGACAAAATTCAATATTGCATAATCTTTATGATCTGCTTGGTTCAAGAGTCCATGATTATATATCATTCTATGGCCTCAGAGCTTATGGTACACTTTTCGATGATGGTCCTGTGGTTTCAAGTCAGGTTTATGTGCATAGTAAAATTATGATTGTTGATGATTGTACTGCGTTGATTGGATCTGCCAACATCAATGATAGGAGTTTACTAGGTTCAAGGGATTCTGAGATTGCTATTGTTATTGAAGACAAAGAACTTGTTAATTCATCTATGGGAGGACAACCATGGAAAGCTGGAAAATTTTGTTGGAGTCTTCGTCTCTCTCTTTGGTCTGAACATCTTGGACTTCGTCCTGCACAGATCAATCAAATAGTTGACCCAGTTGCTGATTCAACCTACAAGGGTACATGGATGGCAACTGCTAAGACGAATACAATGATATATCAAGATGTTTTTTCTTGCATACCAAATGACCTCATTAATTCCAGAGCTGCACTTAGACAAAGCATGGCATATTGGAAAGAGAAGTTGGGCCACACCACAATAGATTTAGGAATTGCACCTGAGAAGCTAGAGTTTTATCAGAATGGAGAAATCGAAAAAATCGATCCTCTGGAGAGATTAAAGGCAGTGAGGGGGCATCTTGTTTCCTTCCCATTGGAATTCCTCAGCAAAGAAGATTTAAGACCCGTGTTTAATGAGAGTGAGTATTATGCATCTCAAGTTTTTCATTAA 3363 42.08 MMGSEQLMGGGGPRYVQMQSDPPTPPPLPSSSMTSFFSFHQGAPEPTRIFDELPKASIVSVSRPDAGDISPMLLSYTIEFHYKQFKWRLLKKASHVFYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGDQTTVVQDEDEQDDEAVPLHHDESSKNRDVPSSAALPIIRPALGRQHSMSDRAMTAMQGYLNHFLGNMDIVNSREVCRFLEVSKLSFSPEYGPKLKEDYVMVKHLPKIAKDDDSRRCCACLWFGCCNDNWQKVWAVLKPGFLALLGDPFDTQPLDLIVFDVLPTSDGNGDGRVSLAMEIKERNPLRHSYKVTCGSRSIRLRAKSGAKVKDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGLIEDGSKAQWFVDGQAAFEAIASSIERAKSEIFICGWWLCPELYLRRPFNTHTSARLDALLEAKAREGVQIYILLYKEVALALKINSVYSKRKLLGIHENVRVLRYPDHFSSGVYLWSHHEKLVIIDYQICFIGGLDLCFGRYDTPEHRVGDCPPSVWPGKDYYNPRESEPNSWEDTMKDELDRRKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPNEQAIPLLMPQHHMVIPHYLGNSRELEVENKNLDNSKETKGQDSFSQRSSFQDIPLLLPQEADSQDAQIEGPKVNGVEPIVNSLDQPSKISSGLSFSFRKVKVEPVGPDMPLKGFVDDLDNLDYHGKLSGDGITQHGGKSSDLEWWETQDREHHGGFIDESGQVGPCASCRCQVIRSVSQWSAGTSQTEESIHVAYCSLIEKAEHFIYIENQFFISGLAGDDIIRNRVLEALYRRIMRAYREKKSFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYDLLGSRVHDYISFYGLRAYGTLFDDGPVVSSQVYVHSKIMIVDDCTALIGSANINDRSLLGSRDSEIAIVIEDKELVNSSMGGQPWKAGKFCWSLRLSLWSEHLGLRPAQINQIVDPVADSTYKGTWMATAKTNTMIYQDVFSCIPNDLINSRAALRQSMAYWKEKLGHTTIDLGIAPEKLEFYQNGEIEKIDPLERLKAVRGHLVSFPLEFLSKEDLRPVFNESEYYASQVFH 1120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49821065 49830096 + evm.model.ptg000003l.76 HCH6g1716 547210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1716 1120 CDD PLDc_vPLD1_2_yPLD_like_2 777 961 - -
HCH6g1716 1120 Gene3D Endonuclease Chain A 370 632 - -
HCH6g1716 1120 SUPERFAMILY Phospholipase D/nuclease 341 604 - -
HCH6g1716 1120 SMART pld_4 917 944 IPR001736 GO:0003824(InterPro)
HCH6g1716 1120 SMART pld_4 484 511 IPR001736 GO:0003824(InterPro)
HCH6g1716 1120 Pfam Phospholipase D Active site motif 484 511 IPR001736 GO:0003824(InterPro)
HCH6g1716 1120 CDD PLDc_vPLD1_2_yPLD_like_1 377 522 - -
HCH6g1716 1120 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 917 944 IPR001736 GO:0003824(InterPro)
HCH6g1716 1120 PIRSF PLD_euk 63 632 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
HCH6g1716 1120 PIRSF PLD_euk 614 1120 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
HCH6g1716 1120 Coils Coil 105 125 - -
HCH6g1716 1120 FunFam Phospholipase 751 971 - -
HCH6g1716 1120 Gene3D - 240 350 IPR011993 -
HCH6g1716 1120 MobiDBLite consensus disorder prediction 136 160 - -
HCH6g1716 1120 SUPERFAMILY PH domain-like 254 347 - -
HCH6g1716 1120 MobiDBLite consensus disorder prediction 1 30 - -
HCH6g1716 1120 SMART PH_update 223 351 IPR001849 -
HCH6g1716 1120 Pfam PLD-like domain 919 964 IPR025202 -
HCH6g1716 1120 Gene3D Endonuclease Chain A 749 973 - -
HCH6g1716 1120 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 484 511 IPR001736 GO:0003824(InterPro)
HCH6g1716 1120 CDD PH_PLD 200 347 - -
HCH6g1716 1120 PANTHER PHOSPHOLIPASE D 177 1101 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
HCH6g1716 1120 SUPERFAMILY Phospholipase D/nuclease 757 965 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0948 HCH-Chr6:44300287 HCH6g1716 HCH-Chr6:49821065 3.00E-35 dispersed
HCH6g1716 HCH-Chr6:49821065 HCH8g0258 HCH-Chr8:13105561 2.80E-17 dispersed
HCH10g0893 HCH-Chr10:11278798 HCH6g1716 HCH-Chr6:49821065 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1716 K01115 - csv:101211856 2035.38