Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1717 ATGGTGCTATTTCCGGCGGTTATTGATGGTTTAGTTAGAAACATATCGATAAAGAAAAAGAATAATGAAGATGTTGGCAATGAAGCTGCTGAGGCATTAGCGAAAGAGGCAAAAAAGAATAAATCTTTGATTTGTTTGTCTGGCAGTGTTAAAACTAGCGTCTCTGATGATATGTCTTCAGTTTGCTCTAAGAGAGGAAATAAAGGGATTAATCAGGATTCTGTTATTGTTTGGGAGGAATATGGATGCCAAGAAGACCTGGTTTTTTGTGGGGTTTTTGATGGACATGGTCCTTGGGGGCATCTGATAAGCAAACAAGTCAGGAAGTCATTGCCTGCTAGGTTGCTGTGCAATTGGCAAGATCACCTTGCTATGGCATCTCTCAACCTGGATTTTGGAACAGAATTGGATGAAAACCTTCTTCCTTTCACTATATGGAAGCAATCCTGCTTAAAAACATATGCGGCAGTTGATCAAGAGCTTAAGCAACATCCTCGCATCGATTCTTTTTATAGTGGTACCACAGCTTTGACAATTGTTAAACAGGGTCAACATCTTGTTATTGCAAACGCTGGTGATTCACGAGCAGTATTGGCAGCCACTTCTGATGACGACACTTTGATACCAGTTCAGCTCACAACTGACTTCAAGCCTAATTTACCTCAGGAGGCTGAGCGAATAACACAATCCAAAGGGCGAGTTTTGTGCTTGCAGGATGAACCAGGAGTGTACCGAGTATGGACTCCGAATTCCCACACACCAGGTTTGGCGATTTCTAGAGCATTTGGTGATTACTGCTCAAAAGAATATGGGCTGATATCTGTGCCTGATGTGAACCACCGAATCTTAACCAGTAGAGATCAGTTTGTCATTCTAGCTACTGATGGGTTGTGGGATGTACTATCGAACCAAGAAGCGGTGCAGATTGTTTCTTCAACGCCAAACAGGGATTTATCAGCCAAAAGGTTGGTGGAGTGCGCTACTCTCGCATGGAAATCCAATAAAAGAGGCACTGCAAGGGATGACATCTCGGCAATTTGCCTCTTTTTTCACTCTTTACCCTCAGAAAAACGGACCCACGTCGCGCACAGTTCCACTGGAGGCCTTAAAACTTCCCGCTGTGAGAAGTTTTGA 1134 43.3 MVLFPAVIDGLVRNISIKKKNNEDVGNEAAEALAKEAKKNKSLICLSGSVKTSVSDDMSSVCSKRGNKGINQDSVIVWEEYGCQEDLVFCGVFDGHGPWGHLISKQVRKSLPARLLCNWQDHLAMASLNLDFGTELDENLLPFTIWKQSCLKTYAAVDQELKQHPRIDSFYSGTTALTIVKQGQHLVIANAGDSRAVLAATSDDDTLIPVQLTTDFKPNLPQEAERITQSKGRVLCLQDEPGVYRVWTPNSHTPGLAISRAFGDYCSKEYGLISVPDVNHRILTSRDQFVILATDGLWDVLSNQEAVQIVSSTPNRDLSAKRLVECATLAWKSNKRGTARDDISAICLFFHSLPSEKRTHVAHSSTGGLKTSRCEKF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49832513 49834596 + evm.model.ptg000003l.75 HCH6g1717 547211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1717 377 Gene3D - 43 352 IPR036457 -
HCH6g1717 377 PANTHER PROTEIN PHOSPHATASE 59 349 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH6g1717 377 FunFam Probable protein phosphatase 2C 34 49 352 - -
HCH6g1717 377 ProSiteProfiles PPM-type phosphatase domain profile. 58 350 IPR001932 -
HCH6g1717 377 SMART PP2C_4 48 348 IPR001932 -
HCH6g1717 377 CDD PP2Cc 58 350 IPR001932 -
HCH6g1717 377 Pfam Protein phosphatase 2C 145 319 IPR001932 -
HCH6g1717 377 SUPERFAMILY PP2C-like 59 352 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1717 HCH-Chr6:49832513 HCH7g0165 HCH-Chr7:1106621 1.90E-82 dispersed
HCH10g0895 HCH-Chr10:11363640 HCH6g1717 HCH-Chr6:49832513 1.50E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1717 - - - 0.0