Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1728 ATGGTTTCTGATCAGTTTCCAGTTGGTATGCGTGTCCTTGTTGTGGATGATGATCCTACTTGCCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTCCTACGCTGTAACGAAATGCAACCGGGCAGAGATTGCCCTGGCCATGCTTCGTGAGAATAAAAACGGATTCGATATTGTCTTAAGTGATGTTCATATGCCAGACATGGATGGATTCAAACTTCTGGAGTACATTGGGCTAGAGATGGACTTGCCTGTTATTATGATGTCTGCAGATGATGGGAAAAATGTTGTGATGAAGGGGGTAATTCACGGTGCCTGTGATTACCTAATCAAACCAGTTCGAATAGAAGCACTAAGGAACATATGGCAACATGTAGTTAGGAAGAGAAAGACAGAATGGAAGGACTTGGAGCAGTCTGGGAGCGTGGAGGAAGGAGATCGAGAGCAAAAAGTATTTGAAGGTGCAAATTATTCATCCTCGGCAAATGAAGGAAGTTGGAACAGCTCAAAGCGGAGGAGGGATGTGGAAGAAGAACTTGAGGAGAGGGATGATACATCCACATTAAAGAAGCCCCGGGTGGTATGGTCAGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTTAATCAGCTAGGCATTGACAAGGCCGTTCCTAAGAAAATATTGGAGTTGATGAATGTTCCAGGGCTTACTAGAGAAAATGTCGCCAGCCACCTTCAGAAATACCGCTTGTATCTTAGAAGGCTCAGCGGAGTATCACCACACCAAAGTAATTTGAACAATTCTTTCATGAGCCCTCAAGATCCGACTTTTGGGTCAATGGCATCATTCAATGGCCTTAATCTTCAGACACTTTCAGTCACTAGTCAACTCTCACCTCAGAGTCTTGCTGCACTCCAAGCAGCAGGACTTAGTAGGTCTACAGCAAAATCTAGCATATCCATGGCCCTTGTTGATCAGAAAAACATATTTAGCTTTGAAAATCCAAAACTGAGGTTTGTTGAGGAGCAGACCCAGCATCTAAATGGCAGCAAACCAGTGAACTTATTCCATGGGATTCCAACAACAATGGAGCCAAGGCAGCTCGCCAATATGCACACTTCTGCACAGACTCTCGGGAACATGAATATGCAACTTAATATCAAGACTGAACAGGGTGGAAATGAACTAATGCAGATGGCTCAACAACAAGCTGGACCGATTCTAAATAACGCTGCTGATAGCCACTTACCCAGAATGCCATCGACAATTAGGCAGCCTATCATATCAAGTGGGGTTATGGTGAGAAATGGGACTGCTCAAGGACCTGGATACAACCTAGTTCCACCGGCATCATTGATGATGAATTTTCCAATGAACCAAACCACAGAATTGTCACACAGTTTTCCACTTCCTAGTAATTCATCAGCATCTACACTCACATCTAGAGGGGCATTTCAAGAAGAGATTTGTTCAGATTTAAAAGAAACAGGAGGATTAATGCCAAGTTATGATGTTTTTAATGACCTGCATCAACAGAAATTCGAAGACTGGGACTGTCAGAATGTAAGCGTGGCCTTTGGTACTCCTCAACACGGGAACTTCATACAGGATAGCCTTGATGTCTCACCCTCAACTTTAGTTCATCATGGTTTTTCTTCGAGCCAAACAAATGGACAAAATCAAAATACGTCAGGTGTTGGAAAGGCCATCTTTTCTTTTTCAGAAGCAACTGAACAAAAGAATGCACAAAGTAATGTTGAAAACTCCCTTCTTGTCAATTCCTTGAAGGTTAAGACTCAGAGAATTCCTGATGAAAGCTATCATAATGGCCTCTTACCTGAGAACTTTGGTCAGGATGAACTTCTTAGTGCCCTCCTCAAACAACAACAAGGAGACGATGGATCAGTTGAAAGTGAGTTCGACTTTAGTGGGTACCACACGGATAATATTTGCGTTTAA 1938 43.03 MVSDQFPVGMRVLVVDDDPTCLRILEKMLQNCSYAVTKCNRAEIALAMLRENKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVEEGDREQKVFEGANYSSSANEGSWNSSKRRRDVEEELEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQSNLNNSFMSPQDPTFGSMASFNGLNLQTLSVTSQLSPQSLAALQAAGLSRSTAKSSISMALVDQKNIFSFENPKLRFVEEQTQHLNGSKPVNLFHGIPTTMEPRQLANMHTSAQTLGNMNMQLNIKTEQGGNELMQMAQQQAGPILNNAADSHLPRMPSTIRQPIISSGVMVRNGTAQGPGYNLVPPASLMMNFPMNQTTELSHSFPLPSNSSASTLTSRGAFQEEICSDLKETGGLMPSYDVFNDLHQQKFEDWDCQNVSVAFGTPQHGNFIQDSLDVSPSTLVHHGFSSSQTNGQNQNTSGVGKAIFSFSEATEQKNAQSNVENSLLVNSLKVKTQRIPDESYHNGLLPENFGQDELLSALLKQQQGDDGSVESEFDFSGYHTDNICV 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49883382 49886699 + evm.model.ptg000003l.64 HCH6g1728 547222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1728 645 MobiDBLite consensus disorder prediction 136 184 - -
HCH6g1728 645 Gene3D - 187 249 - -
HCH6g1728 645 Pfam Response regulator receiver domain 12 120 IPR001789 GO:0000160(InterPro)
HCH6g1728 645 ProSiteProfiles Response regulatory domain profile. 11 126 IPR001789 GO:0000160(InterPro)
HCH6g1728 645 PIRSF RR_ARR_type-B 1 634 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
HCH6g1728 645 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 249 IPR045279 GO:0009736(InterPro)
HCH6g1728 645 MobiDBLite consensus disorder prediction 167 184 - -
HCH6g1728 645 MobiDBLite consensus disorder prediction 136 151 - -
HCH6g1728 645 FunFam Two-component response regulator 10 147 - -
HCH6g1728 645 SUPERFAMILY CheY-like 9 136 IPR011006 -
HCH6g1728 645 Gene3D - 9 144 - -
HCH6g1728 645 CDD REC_typeB_ARR-like 12 126 - -
HCH6g1728 645 Pfam Myb-like DNA-binding domain 192 242 IPR001005 -
HCH6g1728 645 NCBIfam myb-like DNA-binding domain, SHAQKYF class 190 243 IPR006447 GO:0003677(InterPro)
HCH6g1728 645 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 246 IPR017930 -
HCH6g1728 645 FunFam Two-component response regulator 186 249 - -
HCH6g1728 645 SMART REC_2 10 122 IPR001789 GO:0000160(InterPro)
HCH6g1728 645 SUPERFAMILY Homeodomain-like 187 247 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0404 HCH-Chr12:2307853 HCH6g1728 HCH-Chr6:49883382 2.80E-84 dispersed
HCH12g1371 HCH-Chr12:34870632 HCH6g1728 HCH-Chr6:49883382 3.60E-16 dispersed
HCH13g1166 HCH-Chr13:38246718 HCH6g1728 HCH-Chr6:49883382 1.70E-39 dispersed
HCH6g1728 HCH-Chr6:49883382 HCH8g0917 HCH-Chr8:45479988 1.20E-81 dispersed
HCH6g1354 HCH-Chr6:47559200 HCH6g1728 HCH-Chr6:49883382 4.00E-47 transposed
HCH4g1050 HCH-Chr4:6771679 HCH6g1728 HCH-Chr6:49883382 5.40E-14 wgd
HCH6g1728 HCH-Chr6:49883382 HCH7g1048 HCH-Chr7:42435263 1.10E-228 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33803 PF00072 Response_reg 7.90E-23 CL0304 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1728 K14491 - csv:101210138 965.681