Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1739 ATGTCTTTAACTATGAAAGCTGCTGATGTTCAAGGAGACCTCGTTGACTCGGAAATTCATGGTTTCCATACATTGCAAGATTTAGATGTGAAAAACATCAGGGAGGAAGCAAGTGCAAGGTGGCTCCGACCAAATGAAATCCATGCGTTACTCTGTAATCACAGATATTTCGTCATCCATGTCAAGCCTGTGAACTTGCCCAAAAGTGGAACCATTGTATTATTTGATCGTAAGATGCTTAGGAATTTCAGAAAAGATGGTCATAATTGGAAGAAAAAGAAGGACGGGAAGACGGTCAAAGAAGCACATGAACATCTAAAAGTTGGTAATGTAGAAAGGATCCATGTATACTATGCACATGGCCTAGATAACCCGACCTTTGTCCGTCGGTGTTACTGGCTTCTAGATAAGAGTCTTGAACACATAGTCCTCGTACACTACCGTGAGACACAAGAGTTGCAGTGTTCTCCATCCCCATCTATGAATTCAAATTCCGGTTCTGTCTCTGACCCATCTGCTCCTTGGCTTTTACCAGAAGAACTTGATTCCAGGGGTAATCAAGGTTATTGTGTTGGTGAAAATGAACTGTCAGAGCCTAGTGACAATACAACAGTCTTGAATCATGAGCTACGGCTTCATGAGATCAACACACTTGATTGGGATGAGCTGCTTGCATCAAACGAGCCTTTCAACCCTACATTACCTAAAGGAGACAAACTTTTTGACCAACGGCATCAAGTACCAAATGTAGCCAACAATTTATTGGGAGACATTTATTCATTTGGTAATCCAATCGAGCCAATTGGGAGGAGTACTAACAACAACATCAGTTCTCCTGAGAGTGCCTATGTTTCGTCAATAGGTGGTCAAATGAATTTGAATGTAGATAGTAGGGAATTCATTTTAGTAAATTCTGGCAATTCCTTGGATTTTTTGGTAAATGATGGATTGCAAAGTCAGGACAGCTTTGGACAATGGATAAACGAAGTCATCACTGATTCTTCTGGTTCAGTAATTGATCCTGTTATTGAGCCATCTGTTTCGCCTTCTCACAATTCATATACCAATTCGACATTAGATCACCATCAATCTTATGTCACAGACCAAATTTTTAACATAACTGATGTCTCACCTGCATGGGCCTTTTCAACAGAAAAAACGAAGATTCTAATTACTGGATTTTTTCAAACTGAGTATGTACATCTAATGAAGTCCAATATGTTGGTTGTGTGTGGTGATACCAGTGTTAATCTTGATTTTGTTCAACCTGGAGTGTATCGCTGTCTTGTACAACCTCATTCACCAGGACTGGTACATTTATATGTGAGCATAGATGGCCTTAAACCTATAAGTCAAGTTCTGAATTTTGAGTATCGCACACCATTTTTACAAGAACCTGTAGTTGCTTCTGAGTTGGACCACAAGCGGGAAGAATTTCAAGTTCAGATGCGGCTTGCTCATCTATTATTCTCTACATCCAGAAGCCTGAACATCATGTCTAGTAAACTTTCACCCGTTGCTGTGAATGAGGCCAAGAAATTTGCTGTCAGAACTTCTGGCATTTCTGATAGTTGGATTTATTTGATAAAGTCAATTGAAGAAAATAAAGCTCCATTTCCGCAGGCAAAAAATGGTATTTTTGAGATAATTTTGAGGAGCAGGTTAAGAGAATGGTTAATTGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACCGAGTATGATGTAAAAGGTCAAGGAGTTATTCATTTGTGTGCCATATTGGGATATACTTGGGCTGTACATCTATATGTCTGGTCTGGTTTATCAATAGATTTTCGAGACAAATTTGGATGGACCGCTCTGCACTGGGCAGCATATTATGGAAGGGAGAGGATGGTTGCTGCTCTTTTATCTGTTGGATCTAAGCCAAATTTGGTCACCGATCCCTCATCAAAAAACCCTGGGGGGTGCACTGCTGCAGATCTTGCATCTATGAATGGTTACGATGGCTTAGCTGCTTATCTTTCAGAAAAGGCTTTAGTATCTCATTTCAATCAGATGAGTTTGGCTGGAAATGTTAGTGGTTCATTGGAAACAAGTACAACTGATACAGCTAACTCTTATAACATCAGTGAGGAGCAGCTGCATATGAAAGATACATTGGCAGCTTACCGAACAGCGGCTGATGCGGCAGCACGCATACAATCTGCATTTCGTGAGAATTCTCTGAAGCAAAGGACTCAAGCAATTCAATTTTCTACTCCTGAAGATGAAGCTCGCGGTGTTATTGCAGCCATGAAAATTCAACATGCCTACCGCAACTTTGAGATACGAAAAAGGATGGCAGCAGCTGCTCGTATTCAATACAGATTCCGCTCTTGGAAACTTCGCAGAGAATTTCTTAATAAGCGTCGTCAAGTCATTAGAATTCAAGCTGCATTTAGAGGATTCCAAGTGCGGAGGCAATATAGTAAGATTATTTGGTCGGTGGGAGTACTCGAGAAAGCTATACTACGTTGGCGTCTGAAGAGAAAAGGTTTTCGTGGACTTCAAGTTGAACCTGCTGAAGAAGTGGTAGAACAGCAGGAAAGCGGCATTGAAGAGGACTTCTACCGTGTTAGTCAGAAACAAGCTGAGGAGCGAATTGAGAAAGCTGTTGTACGGGTTCAGGCTATGTTTCGATCGAAAAAAGCACAAGAAGAGTATCGGAGGATGAAGCTAACCTATGATGAAGCAGCGCTGGAATATGAAGAACTTTCACATCTTGATACGAATATGAATAGTTGA 2766 40.78 MSLTMKAADVQGDLVDSEIHGFHTLQDLDVKNIREEASARWLRPNEIHALLCNHRYFVIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKSLEHIVLVHYRETQELQCSPSPSMNSNSGSVSDPSAPWLLPEELDSRGNQGYCVGENELSEPSDNTTVLNHELRLHEINTLDWDELLASNEPFNPTLPKGDKLFDQRHQVPNVANNLLGDIYSFGNPIEPIGRSTNNNISSPESAYVSSIGGQMNLNVDSREFILVNSGNSLDFLVNDGLQSQDSFGQWINEVITDSSGSVIDPVIEPSVSPSHNSYTNSTLDHHQSYVTDQIFNITDVSPAWAFSTEKTKILITGFFQTEYVHLMKSNMLVVCGDTSVNLDFVQPGVYRCLVQPHSPGLVHLYVSIDGLKPISQVLNFEYRTPFLQEPVVASELDHKREEFQVQMRLAHLLFSTSRSLNIMSSKLSPVAVNEAKKFAVRTSGISDSWIYLIKSIEENKAPFPQAKNGIFEIILRSRLREWLIERVAEGSKKSTEYDVKGQGVIHLCAILGYTWAVHLYVWSGLSIDFRDKFGWTALHWAAYYGRERMVAALLSVGSKPNLVTDPSSKNPGGCTAADLASMNGYDGLAAYLSEKALVSHFNQMSLAGNVSGSLETSTTDTANSYNISEEQLHMKDTLAAYRTAADAAARIQSAFRENSLKQRTQAIQFSTPEDEARGVIAAMKIQHAYRNFEIRKRMAAAARIQYRFRSWKLRREFLNKRRQVIRIQAAFRGFQVRRQYSKIIWSVGVLEKAILRWRLKRKGFRGLQVEPAEEVVEQQESGIEEDFYRVSQKQAEERIEKAVVRVQAMFRSKKAQEEYRRMKLTYDEAALEYEELSHLDTNMNS 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49948365 49955294 + evm.model.ptg000003l.53 HCH6g1739 547233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1739 921 Gene3D - 772 820 - -
HCH6g1739 921 Coils Coil 888 908 - -
HCH6g1739 921 SUPERFAMILY E set domains 372 459 IPR014756 -
HCH6g1739 921 ProSiteProfiles IQ motif profile. 875 904 - -
HCH6g1739 921 ProSiteProfiles Ankyrin repeat profile. 609 641 IPR002110 GO:0005515(InterPro)
HCH6g1739 921 Pfam CG-1 domain 36 149 IPR005559 GO:0003677(InterPro)
HCH6g1739 921 ProSiteProfiles Ankyrin repeat region circular profile. 609 637 - -
HCH6g1739 921 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 29 904 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
HCH6g1739 921 SUPERFAMILY Ankyrin repeat 571 671 IPR036770 -
HCH6g1739 921 Gene3D Immunoglobulins 366 462 IPR013783 -
HCH6g1739 921 ProSiteProfiles IQ motif profile. 773 800 - -
HCH6g1739 921 SMART ANK_2a 648 679 IPR002110 GO:0005515(InterPro)
HCH6g1739 921 SMART ANK_2a 609 638 IPR002110 GO:0005515(InterPro)
HCH6g1739 921 SMART CG_1_2 33 151 IPR005559 GO:0003677(InterPro)
HCH6g1739 921 Pfam IQ calmodulin-binding motif 798 816 IPR000048 GO:0005515(InterPro)
HCH6g1739 921 Pfam IPT/TIG domain 373 458 IPR002909 -
HCH6g1739 921 Pfam Ankyrin repeats (3 copies) 581 671 IPR002110 GO:0005515(InterPro)
HCH6g1739 921 ProSiteProfiles CG-1 DNA-binding domain profile. 30 156 IPR005559 GO:0003677(InterPro)
HCH6g1739 921 Gene3D - 544 672 IPR036770 -
HCH6g1739 921 SMART iq_5 874 896 IPR000048 GO:0005515(InterPro)
HCH6g1739 921 SMART iq_5 795 817 IPR000048 GO:0005515(InterPro)
HCH6g1739 921 SMART iq_5 772 794 IPR000048 GO:0005515(InterPro)
HCH6g1739 921 ProSiteProfiles IQ motif profile. 796 820 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1739 K21596 - - csv:101211298 1405.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1867 HCH-Chr4:49253703 HCH6g1739 HCH-Chr6:49948365 3.40E-92 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g1867 . 1 1092 CAMTA Transcription Factor Family AT5G64220 54.8 4.6e-288 987.6
HCH10g0079 . 5 967 CAMTA Transcription Factor Family AT1G67310 51.5 2.5e-259 892.1
HCH6g1739 . 35 915 CAMTA Transcription Factor Family AT3G16940 55.2 1.8e-268 922.2
HCH6g1739 . 12 633 CAMTA Transcription Factor Family AT4G16150 54.9 1.3e-198 690.3
HCH4g1867 . 1 1092 CAMTA Transcription Factor Family AT5G64220 54.8 4.6e-288 987.6
HCH10g0079 . 5 967 CAMTA Transcription Factor Family AT1G67310 51.5 2.5e-259 892.1
HCH6g1739 . 12 633 CAMTA Transcription Factor Family AT4G16150 54.9 1.3e-198 690.3
HCH6g1739 . 35 915 CAMTA Transcription Factor Family AT3G16940 55.2 1.8e-268 922.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33806 PF03859 CG-1 2.30E-44 No_clan HCH TF