Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1739 ATGTCTTTAACTATGAAAGCTGCTGATGTTCAAGGAGACCTCGTTGACTCGGAAATTCATGGTTTCCATACATTGCAAGATTTAGATGTGAAAAACATCAGGGAGGAAGCAAGTGCAAGGTGGCTCCGACCAAATGAAATCCATGCGTTACTCTGTAATCACAGATATTTCGTCATCCATGTCAAGCCTGTGAACTTGCCCAAAAGTGGAACCATTGTATTATTTGATCGTAAGATGCTTAGGAATTTCAGAAAAGATGGTCATAATTGGAAGAAAAAGAAGGACGGGAAGACGGTCAAAGAAGCACATGAACATCTAAAAGTTGGTAATGTAGAAAGGATCCATGTATACTATGCACATGGCCTAGATAACCCGACCTTTGTCCGTCGGTGTTACTGGCTTCTAGATAAGAGTCTTGAACACATAGTCCTCGTACACTACCGTGAGACACAAGAGTTGCAGTGTTCTCCATCCCCATCTATGAATTCAAATTCCGGTTCTGTCTCTGACCCATCTGCTCCTTGGCTTTTACCAGAAGAACTTGATTCCAGGGGTAATCAAGGTTATTGTGTTGGTGAAAATGAACTGTCAGAGCCTAGTGACAATACAACAGTCTTGAATCATGAGCTACGGCTTCATGAGATCAACACACTTGATTGGGATGAGCTGCTTGCATCAAACGAGCCTTTCAACCCTACATTACCTAAAGGAGACAAACTTTTTGACCAACGGCATCAAGTACCAAATGTAGCCAACAATTTATTGGGAGACATTTATTCATTTGGTAATCCAATCGAGCCAATTGGGAGGAGTACTAACAACAACATCAGTTCTCCTGAGAGTGCCTATGTTTCGTCAATAGGTGGTCAAATGAATTTGAATGTAGATAGTAGGGAATTCATTTTAGTAAATTCTGGCAATTCCTTGGATTTTTTGGTAAATGATGGATTGCAAAGTCAGGACAGCTTTGGACAATGGATAAACGAAGTCATCACTGATTCTTCTGGTTCAGTAATTGATCCTGTTATTGAGCCATCTGTTTCGCCTTCTCACAATTCATATACCAATTCGACATTAGATCACCATCAATCTTATGTCACAGACCAAATTTTTAACATAACTGATGTCTCACCTGCATGGGCCTTTTCAACAGAAAAAACGAAGATTCTAATTACTGGATTTTTTCAAACTGAGTATGTACATCTAATGAAGTCCAATATGTTGGTTGTGTGTGGTGATACCAGTGTTAATCTTGATTTTGTTCAACCTGGAGTGTATCGCTGTCTTGTACAACCTCATTCACCAGGACTGGTACATTTATATGTGAGCATAGATGGCCTTAAACCTATAAGTCAAGTTCTGAATTTTGAGTATCGCACACCATTTTTACAAGAACCTGTAGTTGCTTCTGAGTTGGACCACAAGCGGGAAGAATTTCAAGTTCAGATGCGGCTTGCTCATCTATTATTCTCTACATCCAGAAGCCTGAACATCATGTCTAGTAAACTTTCACCCGTTGCTGTGAATGAGGCCAAGAAATTTGCTGTCAGAACTTCTGGCATTTCTGATAGTTGGATTTATTTGATAAAGTCAATTGAAGAAAATAAAGCTCCATTTCCGCAGGCAAAAAATGGTATTTTTGAGATAATTTTGAGGAGCAGGTTAAGAGAATGGTTAATTGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACCGAGTATGATGTAAAAGGTCAAGGAGTTATTCATTTGTGTGCCATATTGGGATATACTTGGGCTGTACATCTATATGTCTGGTCTGGTTTATCAATAGATTTTCGAGACAAATTTGGATGGACCGCTCTGCACTGGGCAGCATATTATGGAAGGGAGAGGATGGTTGCTGCTCTTTTATCTGTTGGATCTAAGCCAAATTTGGTCACCGATCCCTCATCAAAAAACCCTGGGGGGTGCACTGCTGCAGATCTTGCATCTATGAATGGTTACGATGGCTTAGCTGCTTATCTTTCAGAAAAGGCTTTAGTATCTCATTTCAATCAGATGAGTTTGGCTGGAAATGTTAGTGGTTCATTGGAAACAAGTACAACTGATACAGCTAACTCTTATAACATCAGTGAGGAGCAGCTGCATATGAAAGATACATTGGCAGCTTACCGAACAGCGGCTGATGCGGCAGCACGCATACAATCTGCATTTCGTGAGAATTCTCTGAAGCAAAGGACTCAAGCAATTCAATTTTCTACTCCTGAAGATGAAGCTCGCGGTGTTATTGCAGCCATGAAAATTCAACATGCCTACCGCAACTTTGAGATACGAAAAAGGATGGCAGCAGCTGCTCGTATTCAATACAGATTCCGCTCTTGGAAACTTCGCAGAGAATTTCTTAATAAGCGTCGTCAAGTCATTAGAATTCAAGCTGCATTTAGAGGATTCCAAGTGCGGAGGCAATATAGTAAGATTATTTGGTCGGTGGGAGTACTCGAGAAAGCTATACTACGTTGGCGTCTGAAGAGAAAAGGTTTTCGTGGACTTCAAGTTGAACCTGCTGAAGAAGTGGTAGAACAGCAGGAAAGCGGCATTGAAGAGGACTTCTACCGTGTTAGTCAGAAACAAGCTGAGGAGCGAATTGAGAAAGCTGTTGTACGGGTTCAGGCTATGTTTCGATCGAAAAAAGCACAAGAAGAGTATCGGAGGATGAAGCTAACCTATGATGAAGCAGCGCTGGAATATGAAGAACTTTCACATCTTGATACGAATATGAATAGTTGA 2766 40.78 MSLTMKAADVQGDLVDSEIHGFHTLQDLDVKNIREEASARWLRPNEIHALLCNHRYFVIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKSLEHIVLVHYRETQELQCSPSPSMNSNSGSVSDPSAPWLLPEELDSRGNQGYCVGENELSEPSDNTTVLNHELRLHEINTLDWDELLASNEPFNPTLPKGDKLFDQRHQVPNVANNLLGDIYSFGNPIEPIGRSTNNNISSPESAYVSSIGGQMNLNVDSREFILVNSGNSLDFLVNDGLQSQDSFGQWINEVITDSSGSVIDPVIEPSVSPSHNSYTNSTLDHHQSYVTDQIFNITDVSPAWAFSTEKTKILITGFFQTEYVHLMKSNMLVVCGDTSVNLDFVQPGVYRCLVQPHSPGLVHLYVSIDGLKPISQVLNFEYRTPFLQEPVVASELDHKREEFQVQMRLAHLLFSTSRSLNIMSSKLSPVAVNEAKKFAVRTSGISDSWIYLIKSIEENKAPFPQAKNGIFEIILRSRLREWLIERVAEGSKKSTEYDVKGQGVIHLCAILGYTWAVHLYVWSGLSIDFRDKFGWTALHWAAYYGRERMVAALLSVGSKPNLVTDPSSKNPGGCTAADLASMNGYDGLAAYLSEKALVSHFNQMSLAGNVSGSLETSTTDTANSYNISEEQLHMKDTLAAYRTAADAAARIQSAFRENSLKQRTQAIQFSTPEDEARGVIAAMKIQHAYRNFEIRKRMAAAARIQYRFRSWKLRREFLNKRRQVIRIQAAFRGFQVRRQYSKIIWSVGVLEKAILRWRLKRKGFRGLQVEPAEEVVEQQESGIEEDFYRVSQKQAEERIEKAVVRVQAMFRSKKAQEEYRRMKLTYDEAALEYEELSHLDTNMNS 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49948365 49955294 + evm.model.ptg000003l.53 HCH6g1739 547233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1739 921 Gene3D - 772 820 - -
HCH6g1739 921 Coils Coil 888 908 - -
HCH6g1739 921 SUPERFAMILY E set domains 372 459 IPR014756 -
HCH6g1739 921 ProSiteProfiles IQ motif profile. 875 904 - -
HCH6g1739 921 ProSiteProfiles Ankyrin repeat profile. 609 641 IPR002110 GO:0005515(InterPro)
HCH6g1739 921 Pfam CG-1 domain 36 149 IPR005559 GO:0003677(InterPro)
HCH6g1739 921 ProSiteProfiles Ankyrin repeat region circular profile. 609 637 - -
HCH6g1739 921 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 29 904 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
HCH6g1739 921 SUPERFAMILY Ankyrin repeat 571 671 IPR036770 -
HCH6g1739 921 Gene3D Immunoglobulins 366 462 IPR013783 -
HCH6g1739 921 ProSiteProfiles IQ motif profile. 773 800 - -
HCH6g1739 921 SMART ANK_2a 648 679 IPR002110 GO:0005515(InterPro)
HCH6g1739 921 SMART ANK_2a 609 638 IPR002110 GO:0005515(InterPro)
HCH6g1739 921 SMART CG_1_2 33 151 IPR005559 GO:0003677(InterPro)
HCH6g1739 921 Pfam IQ calmodulin-binding motif 798 816 IPR000048 GO:0005515(InterPro)
HCH6g1739 921 Pfam IPT/TIG domain 373 458 IPR002909 -
HCH6g1739 921 Pfam Ankyrin repeats (3 copies) 581 671 IPR002110 GO:0005515(InterPro)
HCH6g1739 921 ProSiteProfiles CG-1 DNA-binding domain profile. 30 156 IPR005559 GO:0003677(InterPro)
HCH6g1739 921 Gene3D - 544 672 IPR036770 -
HCH6g1739 921 SMART iq_5 874 896 IPR000048 GO:0005515(InterPro)
HCH6g1739 921 SMART iq_5 795 817 IPR000048 GO:0005515(InterPro)
HCH6g1739 921 SMART iq_5 772 794 IPR000048 GO:0005515(InterPro)
HCH6g1739 921 ProSiteProfiles IQ motif profile. 796 820 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1867 HCH-Chr4:49253703 HCH6g1739 HCH-Chr6:49948365 3.40E-92 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33806 PF03859 CG-1 2.30E-44 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1739 K21596 - csv:101211298 1405.58