Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1747 ATGGCATTTTGGTGGACTATTATCGTTCTTGGATTTGCATATGCGATCTGTAGGTTTCTTTTGATGCTCATTCCTCCCAATGTTCCTTCTATCGACGTCGACGCTTCTGACGTTTTGGACGACGGTAATCAGACTCAAGAGAATAGCTTCATCTATATTCCTCCTAGGGTAAAGACACAACAACAAGACAAGAAAGTCCAATGTTATGAGCCTGCAACCATGAAATACCTTGGCTACTTTCCTGCATTATCACGAGATGAGGTCAAGGAGCGTGTTGCTTCAGCTAGAAAAGCACAGAAAGAATGGGCCAAAAGTAGCTTTAAGCAAAGGCGTTTGCTTTTGCGGATACTTTTAAAGTATATAGTTGAACATCAGGAGCTTATTTGCGAGATCTCTTCACGTGAAACTGGAAAGACAATAGTGGATGCCAATATGGGAGAAGTAATGGCGACATGTGAAAAGATTACCTGGCTTCTTTCCGAGGGTGAGAAATGGCTGAAGCCCGAGACCCGATCTTCTGGAAGGACAATGCTTCACAAGAAAGCCAGAGTGGAATTTCATCCCCTTGGAGTTATTGGTGCAATAGTCCCATGGAACTATCCTTTTCATAACATTTTTAATCCGGTTCTTGCAGCAGTCTTTGCAGGAAATGGTATTGTAGTTAAGGTTTCAGAACATGCAAGTTGGTCTGGATGCTTCTTCATCAGGATTGTCCAAGCTGCACTTGCTGCTGTTGGAGCTCCTGAGAATTTGGTTGATGTGATCACAGGGTTTGCTGAAACAGGTGAAGGTCTAGTATCTTCAGTTGACAAAATGATATTTGTTGGATCTCCTGGTGTGGGTAAGATGATAATGAAATCTGCTGCTGAGACGCTTATTCCAGTTACCCTTGAGCTGGGTGGAAAGGATGCATTTATTGTGTGTGAGGATGTGGATTTGGATCATGTTGTAAACGTTGCTCTCAGAGCTGCTTTTACATCAAGTGGACATAATTGTACTGGAGCTGAGAGATTTTATGTCCACAAGAATATTTATTCTTCATTTGTCGATAAAATTTCAGAACGCGTAAAGTCTATTTCAGTTGGCCCCCCACTTGCTGGGAAATATGATATGGGCGCCATCTGTACACAAGAGCAGTCTGAGAAACTTCAAAGCCTGGTAAATGATGCCTTGGACAGTGGAGCAAAAATTGTTGCTCGTGGAAGTTTTGGGCATTTACCTGAAGGTGCCGTTGATCAATATTTCCCACCTACTGTTCTTGTCGATGTTAACCATACCATGAAATTGATGCAAGAGGAGGCATTTGGACCAATCCTGCCTATAATGAAATTCAGCACAGACGATGAGGTTGTAAAGCTAGCAAATGATTCAAAATACGGGCTTGGTTGCTCTGTTTTTTCTGGCAGTCAGCGGCGTGCCAGGATTATAGCTTCACAGATACATTCTGGAGCTGTTGCAATTAATGATTTCGCAACAAATTATTTGTGTCAGTCCTTGCCATTTGGGGGTGTAAAAGAGAGTGGATTTGGTCGATTTGGAGGTATTGAAGGATTGCGAGCTTGTTGTCTGGTGAAAGCAGTAATTGAGGATAGGTGGTGGCCTTACGTTCAGACCAAGTTTCCCAAACCTGTTGTGTACCCTGTTGCAGACAATGCTTTTGAGTTTCAGACGTCACTTGTTGAAACGATATACGGCCAGAACATATGGGATCGATTAAGAGCGTTGGTCAATGTTCTGAAGATACTCACCGAGCACAACACTCCATCTAGAGATAACTCTGCCGCTGCCGCTGTTGGTGGAAGTAAAAGAAGTGAGTGA 1818 43.01 MAFWWTIIVLGFAYAICRFLLMLIPPNVPSIDVDASDVLDDGNQTQENSFIYIPPRVKTQQQDKKVQCYEPATMKYLGYFPALSRDEVKERVASARKAQKEWAKSSFKQRRLLLRILLKYIVEHQELICEISSRETGKTIVDANMGEVMATCEKITWLLSEGEKWLKPETRSSGRTMLHKKARVEFHPLGVIGAIVPWNYPFHNIFNPVLAAVFAGNGIVVKVSEHASWSGCFFIRIVQAALAAVGAPENLVDVITGFAETGEGLVSSVDKMIFVGSPGVGKMIMKSAAETLIPVTLELGGKDAFIVCEDVDLDHVVNVALRAAFTSSGHNCTGAERFYVHKNIYSSFVDKISERVKSISVGPPLAGKYDMGAICTQEQSEKLQSLVNDALDSGAKIVARGSFGHLPEGAVDQYFPPTVLVDVNHTMKLMQEEAFGPILPIMKFSTDDEVVKLANDSKYGLGCSVFSGSQRRARIIASQIHSGAVAINDFATNYLCQSLPFGGVKESGFGRFGGIEGLRACCLVKAVIEDRWWPYVQTKFPKPVVYPVADNAFEFQTSLVETIYGQNIWDRLRALVNVLKILTEHNTPSRDNSAAAAVGGSKRSE 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49978929 49985084 - evm.model.ptg000003l.45 HCH6g1747 547241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1747 605 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 297 304 IPR029510 GO:0016491(InterPro)
HCH6g1747 605 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 57 527 - -
HCH6g1747 605 Pfam Aldehyde dehydrogenase family 61 527 IPR015590 GO:0016491(InterPro)
HCH6g1747 605 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 500 IPR016163 GO:0016620(InterPro)
HCH6g1747 605 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 525 IPR016162 GO:0016491(InterPro)
HCH6g1747 605 SUPERFAMILY ALDH-like 52 528 IPR016161 GO:0016491(InterPro)
HCH6g1747 605 FunFam aldehyde dehydrogenase 22A1 65 317 - -
HCH6g1747 605 CDD ALDH_F15-22 69 531 - -
HCH6g1747 605 FunFam Aldehyde dehydrogenase A 301 495 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0303 HCH-Chr10:2488783 HCH6g1747 HCH-Chr6:49978929 2.90E-46 dispersed
HCH13g1001 HCH-Chr13:24706509 HCH6g1747 HCH-Chr6:49978929 8.00E-07 dispersed
HCH13g1378 HCH-Chr13:41696090 HCH6g1747 HCH-Chr6:49978929 8.00E-46 dispersed
HCH6g1747 HCH-Chr6:49978929 HCH8g1376 HCH-Chr8:48501650 2.30E-58 dispersed
HCH6g1747 HCH-Chr6:49978929 HCH4g0009 HCH-Chr4:88079 3.60E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1747 - - - 0.0