Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1751 ATGGGAACCCCACCAGCAGAGGAGCTTCTAAGGAAGATCCAAGAGCTGGAAGCGGGTCATGCCCATCTCAAGCAAGAGATGTCTAAACTTTTACTCACTGCTTCTGCTTCTGCTTCTGCTTCTGATTCTGATTCTAATTCTAACCAAAATCATCATCATCATCATCATCAAAGGTCTCATTCAATATCTCCTCAACGCTCCAGATTTGCTGCTTCCACCGGAAGAAGCTCTTCTCCATCTCCTTCTTCATGGAAAAAAGGGTCTTCTTCTTTTCGTCATTCTTCTCCTCTTCAAAGAGAGACCAGAATCCTTAACCCACCCCCTCCCCCTCCCCCCCCTGCTTTCAATTTCACCAATCAACAGTATCTTAATATTTTGCATTCTATGGGACAAGCTATTCATATCTTTGACCTTCATTCTCGTATTATTTATTGGAACCGAACTTCCGAAATTCTCTACGGCTATTCTGCTGCCGAGGTTCTCGGTGAGGATGCCGTCACGCTTCTTGTAGATCCGCAGGACTTTGCTATTGCTGCTGATGTTATTCGTCGTGTTAAGGTAGGGGAGAATTGGACTGGACATTTCCTTGTCAAGAATAAGATGGGCCAAAAATTTGTAGTTGTTGCAACTAAAACTCCATTTTATGATGATGGTACATTATTGGGGATTATCTGTGTTTCCCGCCCTTTTCAAGAATTGAAGGATTCTTTAGCGGATGTTAAACAGCTCGACTCGGATTCGAGCTACGGTAGTTCAAGAACTACTGTCACCACCAAATTTGGCATTGACCCTCAGCATCTTCAAGTGGCAATTGCCTCTAAGATATCGAATTTGGCATCAAAAGTAAGCAACAAAGTCAAGTCCAAAATTCGAACCGGAGAAAACAGCTTAGATCGCGAAGTGGGAAGTGGAGATAGTTATAGTTATCAATCTGATCATGGTTGTCCAGAAACAGTTTTTTGTGACACTCGGGAGGATGCAAATTCAAGTGGAGCTAGCACACCACGAGGAGATATGACACAATCGGCGATTGGTGCCTTTTCTCACATTGAAGAAAAGTCTCCTGGCAAACTTTCCAGGGATTCTGGTGATGACGAGAGTGATGGAAAATCTACCATCCAGAAGATCATATCTTCAAAAGCAGAAGCATGGATTGCCAAGAAAGGCTTATCCTGGCCATGGAAAGGGAGCGAGCATGAAGGACCAGAGACGAAAACTGCCCGCTTTGTTTGGCCTTGGTTACAATATGATCAAGAGACAGAACCAGGTAATCCTAAGAGTTCCTCTTCAGCTGGCAAACCAGAATTGCAGCAAAGTGAAGGTTGTCGAGCAGTCAATAATGAGGCCTCGGGGTCCTGGTCCTCATTCAATGTTAACAGCAACAGCAGTGCTAGCAGCTGTGGAAGTACCAGCAGCAGTGCTGTTAACAAGGCCGACACCGAAATAGACTGCTTGGATTATGAAATATTGTGGGAAGACCTTACAATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTACCATGCGTTGTGGTATGGATCTGACGTTGCTATCAAAGTATTTTCGAAGCAGGAATATTCAGAGGATGTGATACTCTCCTTCGGACAGGAGGTATCTCTGATGAAAAGGTTAAGGCACCCCAATATTCTTCTCTTTATGGGAGTCGTGACTTCGCCTCAGCGTCTCTGCATTGTTACAGAATTTCTTCCACGTGGAAGTTTATTTCGTTTACTACAGAGGAACACAGCTAAACTAGATTGGAGGCGACGCGTTCATATGGCTTTGGACATCGCCAGAGGCATGAACTATCTTCATCATTCCAATCCACCTATCATTCACCGAGATTTGAAATCTTCAAATCTTCTGATTGATAAAAACTGGACAGTGAAGGTTGGTGATTTTGGTCTATCACGTCTCAAGCATGAAACCTATCTAACAACGAAGACGGGGAGAGGAACGCCTCAATGGATGGCACCTGAAGTTCTTCGTAATGAACCCTCGGATGAGAAGTCCGACATATACAGTTTTGGAGTCATACTTTGGGAGCTTGCCACTGAGAAGATCCCTTGGGAAAATCTGAATTCAATGCAGGTAATTGGTGCCGTCGGGTTTATGAACCAACGACTTGAAATCCCGAAAGACGTAGATCCACAATGGGTTTCTTTAATCGAAAGCTGCTGGAACAGCGAACCTGCAAGCCGGCCATCATTCCAAGTACTGATAGATAGGCTCAGAGAGCTGCAGAGAAAGTATACAATGCAATTTCAGGCAGCTCGTTCAACTTCAGTTTCAGGTGTAGATATCCCTCCAAAGGAAACTTAA 2328 44.29 MGTPPAEELLRKIQELEAGHAHLKQEMSKLLLTASASASASDSDSNSNQNHHHHHHQRSHSISPQRSRFAASTGRSSSPSPSSWKKGSSSFRHSSPLQRETRILNPPPPPPPPAFNFTNQQYLNILHSMGQAIHIFDLHSRIIYWNRTSEILYGYSAAEVLGEDAVTLLVDPQDFAIAADVIRRVKVGENWTGHFLVKNKMGQKFVVVATKTPFYDDGTLLGIICVSRPFQELKDSLADVKQLDSDSSYGSSRTTVTTKFGIDPQHLQVAIASKISNLASKVSNKVKSKIRTGENSLDREVGSGDSYSYQSDHGCPETVFCDTREDANSSGASTPRGDMTQSAIGAFSHIEEKSPGKLSRDSGDDESDGKSTIQKIISSKAEAWIAKKGLSWPWKGSEHEGPETKTARFVWPWLQYDQETEPGNPKSSSSAGKPELQQSEGCRAVNNEASGSWSSFNVNSNSSASSCGSTSSSAVNKADTEIDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAIKVFSKQEYSEDVILSFGQEVSLMKRLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTAKLDWRRRVHMALDIARGMNYLHHSNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWVSLIESCWNSEPASRPSFQVLIDRLRELQRKYTMQFQAARSTSVSGVDIPPKET 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50008366 50012407 + evm.model.ptg000003l.41 HCH6g1751 547245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1751 775 ProSiteProfiles PAS repeat profile. 118 189 IPR000014 -
HCH6g1751 775 MobiDBLite consensus disorder prediction 320 372 - -
HCH6g1751 775 FunFam PAS domain-containing protein tyrosine kinase 487 571 - -
HCH6g1751 775 SMART pas_2 120 187 IPR000014 -
HCH6g1751 775 PANTHER SERINE-THREONINE PROTEIN KINASE 60 749 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH6g1751 775 PRINTS Tyrosine kinase catalytic domain signature 717 739 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g1751 775 PRINTS Tyrosine kinase catalytic domain signature 673 695 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g1751 775 PRINTS Tyrosine kinase catalytic domain signature 654 664 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g1751 775 PRINTS Tyrosine kinase catalytic domain signature 568 581 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g1751 775 PRINTS Tyrosine kinase catalytic domain signature 607 625 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g1751 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g1751 775 SMART serkin_6 494 754 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1751 775 SUPERFAMILY PYP-like sensor domain (PAS domain) 119 228 IPR035965 -
HCH6g1751 775 ProSiteProfiles Protein kinase domain profile. 494 754 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1751 775 MobiDBLite consensus disorder prediction 63 101 - -
HCH6g1751 775 Gene3D PAS domain 129 234 - -
HCH6g1751 775 Gene3D Transferase(Phosphotransferase) domain 1 572 769 - -
HCH6g1751 775 Gene3D Phosphorylase Kinase; domain 1 487 571 - -
HCH6g1751 775 MobiDBLite consensus disorder prediction 420 441 - -
HCH6g1751 775 CDD PAS 129 228 IPR000014 -
HCH6g1751 775 Coils Coil 6 33 - -
HCH6g1751 775 MobiDBLite consensus disorder prediction 353 371 - -
HCH6g1751 775 SUPERFAMILY Protein kinase-like (PK-like) 479 744 IPR011009 -
HCH6g1751 775 MobiDBLite consensus disorder prediction 33 116 - -
HCH6g1751 775 MobiDBLite consensus disorder prediction 102 116 - -
HCH6g1751 775 Pfam PAS fold 121 228 IPR013767 GO:0006355(InterPro)
HCH6g1751 775 NCBIfam PAS domain S-box protein 120 228 IPR000014 -
HCH6g1751 775 Pfam Protein tyrosine and serine/threonine kinase 494 746 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g1751 775 FunFam PAS domain-containing protein tyrosine kinase family protein 572 763 - -
HCH6g1751 775 MobiDBLite consensus disorder prediction 323 341 - -
HCH6g1751 775 MobiDBLite consensus disorder prediction 418 441 - -
HCH6g1751 775 CDD STKc_MAP3K-like 500 746 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1774 HCH-Chr4:35794811 HCH6g1751 HCH-Chr6:50008366 7.90E-38 dispersed
HCH6g1751 HCH-Chr6:50008366 HCH8g0166 HCH-Chr8:6185226 3.20E-97 dispersed
HCH6g1751 HCH-Chr6:50008366 HCH11g0373 HCH-Chr11:3504491 6.30E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81608 PF07714 PK_Tyr_Ser-Thr 5.50E-68 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1751 - - - 0.0