Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1755 ATGCTCCGGGGATTAATGAATCTGCTCTCTCTTTGCTGGAAGCCTTTCGGGCATTCTTCTGATAATAACAACTTAACTTCTGTGGGTGTTATTGCTTCTAAAGATTCAAAGGATACTTTACTCTGCTTCTATGACTTTGGTAATTATGCTTCTGGTGATTTTTCCATGGCGGTCGTCCAAGCCAATCAAGTCCTCGAAGACCAATCCCAGATTCAATCTTCCCCTTCTTCTACCTTTGTTGGTATCTACGATGGTCACGGTGGCCCTGACGCCGCTCGTTTCGTTTCCGATCATTTGTTTTCCCATTTTCAAGAGTTTGCAGCTGAACAACAGGGTGTCGTGACTCGTGAAACCATTCTAAATGCTTTTCGTCAAACGGAGGAAGGGTTCACGGCTGTCGTGTCTGATTTATGGAATACTCGGCCTCAGTTAGCAACCGTTGGGACCTGCTGTCTTGTTGGGGTAATACATGAGCAGACACTCTTTGTCGCCAGTCTTGGAGATTCTCGCGCTGTCTTGGGTAAGAAAGTTGGTAATACTGGACAGATTGCTCCCATTCAGCTATCCACGGAGCATAATGCTAATCTTGAAGATATCAGGCATGAATTAAAGGAATTGCATCCCAATGATCCTCACATTGTCGTCCAAAAACATGGAGTTTGGAGAGTCAAAGGCATTATACAGGTTTCTAGAAGCATTGGGGATGTGTATTTGAAACATGCTCGGTTTAATACAGATCGAATCAATGCGAAATTCAGAATTCCTGAACCAATGGATATGCCTATATTGTCCGCGGTTCCTACGATCATCGCTCATCCCCTTCATCCAAATGACTCTTTTCTCATATTTGCGTCTGATGGACTTTGGGAACACCTAAGTAATGAACAAGCAGTGGATATTGTCCATAATCATCCACGTGCAGGAAGTGCAAAAAGGCTTATCAAGGCAGCCTTACAAGAAGCAGCAAGAAAACGAGAGATGAGATATTCAGATCTCAGAAAAATTGACAAGAAAGTTCGGCGTCATTTTCACGATGACATCAGTGTTATTGTTTTATTTTTCAACCATGACCTCATTTCCACAAACAATATTCTCGATCACCCACTATCAATCCGCAGTGCTCTTGATCATTGCTAG 1137 43.01 MLRGLMNLLSLCWKPFGHSSDNNNLTSVGVIASKDSKDTLLCFYDFGNYASGDFSMAVVQANQVLEDQSQIQSSPSSTFVGIYDGHGGPDAARFVSDHLFSHFQEFAAEQQGVVTRETILNAFRQTEEGFTAVVSDLWNTRPQLATVGTCCLVGVIHEQTLFVASLGDSRAVLGKKVGNTGQIAPIQLSTEHNANLEDIRHELKELHPNDPHIVVQKHGVWRVKGIIQVSRSIGDVYLKHARFNTDRINAKFRIPEPMDMPILSAVPTIIAHPLHPNDSFLIFASDGLWEHLSNEQAVDIVHNHPRAGSAKRLIKAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFFNHDLISTNNILDHPLSIRSALDHC 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50026499 50028434 + evm.model.ptg000003l.37 HCH6g1755 547249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1755 378 CDD PP2Cc 78 354 IPR001932 -
HCH6g1755 378 Gene3D - 45 364 IPR036457 -
HCH6g1755 378 SMART PP2C_4 40 352 IPR001932 -
HCH6g1755 378 FunFam Probable protein phosphatase 2C 42 44 362 - -
HCH6g1755 378 PANTHER PROTEIN PHOSPHATASE 53 353 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH6g1755 378 SUPERFAMILY PP2C-like 61 355 IPR036457 -
HCH6g1755 378 Pfam Protein phosphatase 2C 68 322 IPR001932 -
HCH6g1755 378 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169(InterPro)
HCH6g1755 378 ProSiteProfiles PPM-type phosphatase domain profile. 53 354 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1755 HCH-Chr6:50026499 HCH7g0452 HCH-Chr7:3352611 2.10E-113 dispersed
HCH6g1755 HCH-Chr6:50026499 HCH13g1328 HCH-Chr13:41196164 3.10E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1755 K01102 - csv:101207284 640.958