Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1758 ATGGCTTCATCTCTTGTTTCAAACTCCGATCGAACGCGGGAGTCTTCCAATTCCAGGAAGCAAAAGAAGAAGAAAAACCAGACAAACAGAGACCATCATCAAAACCAGAATCATATTAAATGGAAATCTCAAACTCAACAGGAAATCTACTCCTCCAAGCTGATACGAGCTCTCAATCAAGTCAGGCTAAGTCCATCGCCTTCGGCTACGGCTTCCAATGAAACTCCACGTCGTGGAAGAGCCGTACGTGAGGCAGCCGATAGAGTCCTTGCAGTTGCAGCCAAAGGAAGAACCAGATGGAGTCGAGCCATCTTAACGAACCGGCTCAAGCTCAAGTTCAGGAAACCCAAAAGGCAGAGAGCATGTGCAACTGCAAATAGCCGCCCAAAGAAACCAAGAGTCAGCGTTTTGCGGTTAAAAGGGAAATCTTTACCCGCGGTTCAGAGGAAAGTTCGGGTTCTTGGACGGCTGGTTCCCGGTTGCAGAAAAGAACCGTTGCCGGTTATACTGGAAGAGGCAACTGATTATATTGCTGCACTTGAAATGCAAGTTAGAGCCATGAGTGCACTTGCTGAGTTGCTCTCAAGGCCTGGCTCAACTAGCCCTGCCCCTGCCCCTGCCCCTGCCCCACCAAGCTGA 639 49.61 MASSLVSNSDRTRESSNSRKQKKKKNQTNRDHHQNQNHIKWKSQTQQEIYSSKLIRALNQVRLSPSPSATASNETPRRGRAVREAADRVLAVAAKGRTRWSRAILTNRLKLKFRKPKRQRACATANSRPKKPRVSVLRLKGKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMSALAELLSRPGSTSPAPAPAPAPPS 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50037608 50038246 + evm.model.ptg000003l.34 HCH6g1758 547252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1758 212 CDD bHLH_AtIBH1_like 136 191 IPR044549 GO:0006355(InterPro)
HCH6g1758 212 MobiDBLite consensus disorder prediction 1 44 - -
HCH6g1758 212 MobiDBLite consensus disorder prediction 62 82 - -
HCH6g1758 212 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 38 194 IPR044660 GO:0006355(InterPro)
HCH6g1758 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 201 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0937 HCH-Chr10:12766428 HCH6g1758 HCH-Chr6:50037608 4.80E-28 dispersed
HCH2g0708 HCH-Chr2:50830027 HCH6g1758 HCH-Chr6:50037608 1.40E-38 transposed
HCH6g1758 HCH-Chr6:50037608 HCH8g0052 HCH-Chr8:2925250 1.10E-36 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1758 - - - 0.0