Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1759 ATGGAGAAGAAAGAAGGGTTGTTAATAAAGAAAGAGAATTCGAATTCCATGGAAAATTCTGGTTTGTTATTCTCTGATACGATTCCAACTAGCTTTGGTCTATCCTCCTCCTCTTCCTCCTCCTCCTCCACTGCCATGTTTGAATCCACTACTGACTTTAAGGCTTCCAGCTTCTTGGATTTATTAGGATTCCACGATTATGATTATAATTACAACTACAATTACAACCCTTCTTTATTTGATATCTTTTCTAATTCAACTCCTCCTCCTCCTCCTCCTATTTTGCCGCCTCCCTCTTCTTCCACTCCCTTTCACGAACCTGACTCCTCTGAGGTTTTGAATACTCCTCCCTCTCCTAACTCTTCTTCCATCTCTTGTTCTTCCAATGAACACCTCACTAAAGCTGCTGATCTCGATGCCGACGATGACGACCTGGATCGGGATAATTATAAGCCTGATTCTAACAAACCGTTGAAAGCAAAAAAGAAGAACCAAAAAAGGCAAAGGGAACCGAGATTTGCGTTCATGACAAAGAGCGAAGTGGATCACCTTGATGACGGCTACAGATGGCGCAAGTACGGTCAAAAAGCTGTTAAAAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCACCGCAGGATGCGGGGTCAAGAAGCGGGTGGAGCGATCGTCCGATGACCCTTCGATCGTCGTCACCACTTACGAAGGTCAGCACACGCATCAAAGCCCTATAATGCCTCGTGGAACTCTATCCATTCCGATGGAAGCTGCCACTGCCAATTTCAGCCACTCCAACACTCCCTCCCCACAATCACTTGTTTTTCCACAACCGAAATATCACCAGCACCAACATCAGCAAGCCCAATATATCTATAGCCCCGCGCCACCACTAGATATTGTTAGCTTTGATCCAACGTTTCCGGGTTTTGTACAAGAGCGACGTCGCCTTAGCAGCCCATCCTCAGCTTCTAATAATTTCATGAAAGACCATGGACTTCTTCAGGACATGATTATACCATCCCATTCCCAATCGCAGCAGATTCCCAAGAATCCAAAAGAAGAGTAG 1068 45.51 MEKKEGLLIKKENSNSMENSGLLFSDTIPTSFGLSSSSSSSSSTAMFESTTDFKASSFLDLLGFHDYDYNYNYNYNPSLFDIFSNSTPPPPPPILPPPSSSTPFHEPDSSEVLNTPPSPNSSSISCSSNEHLTKAADLDADDDDLDRDNYKPDSNKPLKAKKKNQKRQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHQSPIMPRGTLSIPMEAATANFSHSNTPSPQSLVFPQPKYHQHQHQQAQYIYSPAPPLDIVSFDPTFPGFVQERRRLSSPSSASNNFMKDHGLLQDMIIPSHSQSQQIPKNPKEE 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50053472 50054886 + evm.model.ptg000003l.33 HCH6g1759 547253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1759 355 MobiDBLite consensus disorder prediction 134 159 - -
HCH6g1759 355 Pfam WRKY DNA -binding domain 185 242 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1759 355 MobiDBLite consensus disorder prediction 89 172 - -
HCH6g1759 355 MobiDBLite consensus disorder prediction 314 355 - -
HCH6g1759 355 MobiDBLite consensus disorder prediction 89 103 - -
HCH6g1759 355 MobiDBLite consensus disorder prediction 315 329 - -
HCH6g1759 355 Gene3D WRKY domain 168 245 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1759 355 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 124 275 IPR044810 GO:0003700(InterPro)
HCH6g1759 355 MobiDBLite consensus disorder prediction 104 132 - -
HCH6g1759 355 SUPERFAMILY WRKY DNA-binding domain 176 244 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1759 355 FunFam WRKY transcription factor 57 170 244 - -
HCH6g1759 355 ProSiteProfiles WRKY domain profile. 179 244 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1759 355 SMART WRKY_cls 184 243 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0184 HCH-Chr14:27738487 HCH6g1759 HCH-Chr6:50053472 1.40E-27 dispersed
HCH2g0907 HCH-Chr2:52563592 HCH6g1759 HCH-Chr6:50053472 9.30E-35 dispersed
HCH4g0517 HCH-Chr4:3401833 HCH6g1759 HCH-Chr6:50053472 4.80E-24 dispersed
HCH6g1759 HCH-Chr6:50053472 HCH7g0047 HCH-Chr7:332760 9.50E-36 dispersed
HCH9g0839 HCH-Chr9:5940006 HCH6g1759 HCH-Chr6:50053472 7.70E-11 dispersed
HCH4g0140 HCH-Chr4:781371 HCH6g1759 HCH-Chr6:50053472 1.30E-39 transposed
HCH4g1092 HCH-Chr4:7073456 HCH6g1759 HCH-Chr6:50053472 1.70E-40 wgd
HCH6g1759 HCH-Chr6:50053472 HCH7g1019 HCH-Chr7:41611714 4.10E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33807 PF03106 WRKY 5.10E-27 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1759 - - - 0.0