Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1760 ATGGTTAAGTATTTGACTTTCCATTTTTGTGTAGTAATGCTTCAGCTTATTTCAATCACGTCCACAAATGTGACACAAAACATAACCAAACCAACATTCTCTGGACAAGGGATTGAAAAACAGTTGCCGTGGATCACCAAAAACCAATTAAACTGTCCAGAGGCAGAAGCCATCATCTTCTCTTGGGTCCAAATGGCAATTTCTCAGGACCCCAGAATGGCAGCTTCTCTTCTACGTCTCCATTTCCATGACTGCTTTGGGTGTGATGCTTCAGTGCTGCTAGATGACACTGATAACTTCATAGGTGAAAAAAATGCCGCTCCAAATGTCAATTCACTGAGGGGTTTTGAAGTCATCGATGCGATTAAATCAGAAATTGAATCTGTTTGCCCCCACACAGTTTCATGTGCAGACATTCTAACAATTGCAGCGAGAGACTCCATTGGGCTTTCAGGAGGACCAGTTTGGAAAATTGAATTGGGAAGAAGAGATAGCTTGAGTGCCAGCAAAACAGACGCAGAAAATAACATTCCTGGCCCAAACTCAACTGTGGCAACTTTGGTTTCTAAGTTCCAGAAATTGGGCCTCACACTCAGAGATATGGTCGCACTCTCGGGAGCGCATACACTAGGAAAAGCCCGATGTGTTTCATTTAGCTCAAGGCTGCACGGCAGCAGCAGCGACAGCTTGACGAAAGGAGCAAATCAAGAGTATATCGAGTCATTAAGACAGTTATGTTCGGGATCTGATTCGGGTAGCGGCACAACATTGGCAGAACTTGACCTTGTAACCCCATTGACTTTCGACAACCAGTACTACATTAATCTTCTTTTGGGAGAGGGGTTGCTCCAATCTGACCAGGTTCTCGTTACTGGGGATTACGAGACGAGGGAAATAGTTGAAACCTACGCCGTTGATCTGATTGCCTTCTTTGAAGACTTCAAGAAGTCCATGGTGAAAATGGGAGACCTAAAACCACCAATGGGAGCAGAGACCATGATCCGGACCAATTGTCGAATTATAAGCTAG 1029 44.41 MVKYLTFHFCVVMLQLISITSTNVTQNITKPTFSGQGIEKQLPWITKNQLNCPEAEAIIFSWVQMAISQDPRMAASLLRLHFHDCFGCDASVLLDDTDNFIGEKNAAPNVNSLRGFEVIDAIKSEIESVCPHTVSCADILTIAARDSIGLSGGPVWKIELGRRDSLSASKTDAENNIPGPNSTVATLVSKFQKLGLTLRDMVALSGAHTLGKARCVSFSSRLHGSSSDSLTKGANQEYIESLRQLCSGSDSGSGTTLAELDLVTPLTFDNQYYINLLLGEGLLQSDQVLVTGDYETREIVETYAVDLIAFFEDFKKSMVKMGDLKPPMGAETMIRTNCRIIS 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50057948 50059278 + evm.model.ptg000003l.32 HCH6g1760 547254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1760 342 SUPERFAMILY Heme-dependent peroxidases 51 340 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 FunFam Peroxidase 48 190 - -
HCH6g1760 342 FunFam Peroxidase 178 321 - -
HCH6g1760 342 Pfam Peroxidase 62 305 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 CDD secretory_peroxidase 52 339 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH6g1760 342 PRINTS Plant peroxidase signature 52 71 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 PRINTS Plant peroxidase signature 114 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 PRINTS Plant peroxidase signature 152 167 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 PRINTS Plant peroxidase signature 259 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 PRINTS Plant peroxidase signature 133 143 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 PRINTS Plant peroxidase signature 76 96 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 PRINTS Plant peroxidase signature 275 292 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 PRINTS Plant peroxidase signature 199 211 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 PRINTS Plant peroxidase signature 316 329 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 ProSiteProfiles Plant heme peroxidase family profile. 41 342 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 Gene3D Peroxidase, domain 2 178 321 - -
HCH6g1760 342 ProSitePatterns Peroxidases active site signature. 74 85 IPR019794 GO:0004601(InterPro)
HCH6g1760 342 PANTHER PEROXIDASE 72-RELATED 49 340 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 Gene3D - 51 341 - -
HCH6g1760 342 PRINTS Haem peroxidase superfamily signature 74 88 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 PRINTS Haem peroxidase superfamily signature 152 164 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 PRINTS Haem peroxidase superfamily signature 134 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 PRINTS Haem peroxidase superfamily signature 261 276 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 PRINTS Haem peroxidase superfamily signature 200 215 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH6g1760 342 ProSitePatterns Peroxidases proximal heme-ligand signature. 200 210 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0300 HCH-Chr5:1873911 HCH6g1760 HCH-Chr6:50057948 9.50E-78 dispersed
HCH6g1760 HCH-Chr6:50057948 HCH7g0118 HCH-Chr7:769221 3.30E-70 dispersed
HCH6g1760 HCH-Chr6:50057948 HCH14g0610 HCH-Chr14:34853882 1.90E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1760 K00430 - csv:101205763 466.077