Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g1774 | ATGGTAGCGGAAGCAGAATTGATACGACAGAAAACCATTCCAATTCCTGATATTCAAATTCCGATTCCGATTCCAGTGATGAACGCGACTCTTCATCATCATCATCATCTTCTTCTTAATGGACGACCACGCGACTCTTCCCCTACCTTCCTTCCCGACCCAATCTCCCTCTTCGACTCGGCAGTTAATTGCTCAGATACCATGGAGGATGCTCATGTAGACTCCACTCCTGTTGATTTTCTCCCAAACATTCGTTCTGGTAGCTATGCTGACATTGGTTCTCGGCAGTCCATGGATGATGAACATGTCTGCATTGATGATCTATCTACCCACCTTGATTCTGTCTTTAAATGTTCTTTGCCTACTGGTTTCTATGCTGTTTTTGATGGTCATGGTGGTCCTCATGCAGCAACTTTTCTCAGGAACAATGCCCTTAGATTGTTCTTTGAAGATGCTGATTGGTTTAAAACAATTGATACTGATTCCATTTCCTTGAAAGATTTGGAGAATTCTCATCGCAGAGCATTTTTACTGGCAGACCTTGCCTTGGCTGATGAACAAAGTGTTAGCAGCTCATGTGGAACAACTGCACTGACGGCGTTGGTTCTCGGACGGCATTTGCTTGTAGCAAATGCTGGTGACTGCCGAGCAGTTCTCTGCAGAAAAGGTGTAGCTGTTCCTATGTCTCAAGATCACAGGCCTTCTTCTAATTTACTTGAGCTCAAGCGAGTACAAGGGATGGGTGGTTTTGTAGATGATGGATATCTTAATGGCTATATCGCGGTTACCCGTGCTTTGGGGGATTGGGATCTGAAATCACCATTTGGTTCCTCATCACCTCTTATTGCTGAGCCACAAGTTGAGCATGTTGTGTTAACAAAGGATGATGAATTCTTGGTCATTGCTTGTGATGGGATATGGGATGTTATGTCAAGCCAATATGCTGTCAGTCATGTTCGCCGTGGGTTGAGAAAGCACAATGATCCACAGCAATGTGCCCAAGAATTAGTCTTAGAAGCGTTGCGCCTCAATACATCGGATAATCTGACTGCAATCGTAATATGCTTTTCTTCCCCCAGCTGCGTTGTGGAGACATGTCCACAGCAGCGAATATGGAAGTCATGTAGTATTACAGAAGAAGCTAGAAGCTAG | 1152 | 44.44 | MVAEAELIRQKTIPIPDIQIPIPIPVMNATLHHHHHLLLNGRPRDSSPTFLPDPISLFDSAVNCSDTMEDAHVDSTPVDFLPNIRSGSYADIGSRQSMDDEHVCIDDLSTHLDSVFKCSLPTGFYAVFDGHGGPHAATFLRNNALRLFFEDADWFKTIDTDSISLKDLENSHRRAFLLADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGVAVPMSQDHRPSSNLLELKRVQGMGGFVDDGYLNGYIAVTRALGDWDLKSPFGSSSPLIAEPQVEHVVLTKDDEFLVIACDGIWDVMSSQYAVSHVRRGLRKHNDPQQCAQELVLEALRLNTSDNLTAIVICFSSPSCVVETCPQQRIWKSCSITEEARS | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 50127475 | 50128904 | - | evm.model.ptg000003l.18 | HCH6g1774 | 547268 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g1774 | 383 | SMART | PP2C_SIG_2 | 100 | 356 | IPR001932 | - | |
HCH6g1774 | 383 | PANTHER | PROTEIN PHOSPHATASE 2C | 68 | 356 | IPR015655 | GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER) | |
HCH6g1774 | 383 | Gene3D | - | 62 | 360 | IPR036457 | - | |
HCH6g1774 | 383 | ProSiteProfiles | PPM-type phosphatase domain profile. | 85 | 356 | IPR001932 | - | |
HCH6g1774 | 383 | SUPERFAMILY | PP2C-like | 79 | 357 | IPR036457 | - | |
HCH6g1774 | 383 | SMART | PP2C_4 | 75 | 354 | IPR001932 | - | |
HCH6g1774 | 383 | Pfam | Protein phosphatase 2C | 93 | 348 | IPR001932 | - | |
HCH6g1774 | 383 | CDD | PP2Cc | 84 | 356 | IPR001932 | - | |
HCH6g1774 | 383 | ProSitePatterns | PPM-type phosphatase domain signature. | 124 | 132 | IPR000222 | GO:0043169(InterPro) | |
HCH6g1774 | 383 | FunFam | Probable protein phosphatase 2C 22 | 66 | 359 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g1111 | HCH-Chr4:7273095 | HCH6g1774 | HCH-Chr6:50127475 | 5.80E-108 | dispersed | |
HCH4g1258 | HCH-Chr4:8649790 | HCH6g1774 | HCH-Chr6:50127475 | 3.30E-28 | dispersed | |
HCH6g1774 | HCH-Chr6:50127475 | HCH9g1262 | HCH-Chr9:35875538 | 3.50E-28 | dispersed | |
HCH6g1774 | HCH-Chr6:50127475 | HCH7g0133 | HCH-Chr7:899353 | 1.40E-32 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33808 | PF00481 | PP2C | 2.00E-64 | CL0238 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH6g1774 | K14803 | - | csv:101207477 | 531.176 |