Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1774 ATGGTAGCGGAAGCAGAATTGATACGACAGAAAACCATTCCAATTCCTGATATTCAAATTCCGATTCCGATTCCAGTGATGAACGCGACTCTTCATCATCATCATCATCTTCTTCTTAATGGACGACCACGCGACTCTTCCCCTACCTTCCTTCCCGACCCAATCTCCCTCTTCGACTCGGCAGTTAATTGCTCAGATACCATGGAGGATGCTCATGTAGACTCCACTCCTGTTGATTTTCTCCCAAACATTCGTTCTGGTAGCTATGCTGACATTGGTTCTCGGCAGTCCATGGATGATGAACATGTCTGCATTGATGATCTATCTACCCACCTTGATTCTGTCTTTAAATGTTCTTTGCCTACTGGTTTCTATGCTGTTTTTGATGGTCATGGTGGTCCTCATGCAGCAACTTTTCTCAGGAACAATGCCCTTAGATTGTTCTTTGAAGATGCTGATTGGTTTAAAACAATTGATACTGATTCCATTTCCTTGAAAGATTTGGAGAATTCTCATCGCAGAGCATTTTTACTGGCAGACCTTGCCTTGGCTGATGAACAAAGTGTTAGCAGCTCATGTGGAACAACTGCACTGACGGCGTTGGTTCTCGGACGGCATTTGCTTGTAGCAAATGCTGGTGACTGCCGAGCAGTTCTCTGCAGAAAAGGTGTAGCTGTTCCTATGTCTCAAGATCACAGGCCTTCTTCTAATTTACTTGAGCTCAAGCGAGTACAAGGGATGGGTGGTTTTGTAGATGATGGATATCTTAATGGCTATATCGCGGTTACCCGTGCTTTGGGGGATTGGGATCTGAAATCACCATTTGGTTCCTCATCACCTCTTATTGCTGAGCCACAAGTTGAGCATGTTGTGTTAACAAAGGATGATGAATTCTTGGTCATTGCTTGTGATGGGATATGGGATGTTATGTCAAGCCAATATGCTGTCAGTCATGTTCGCCGTGGGTTGAGAAAGCACAATGATCCACAGCAATGTGCCCAAGAATTAGTCTTAGAAGCGTTGCGCCTCAATACATCGGATAATCTGACTGCAATCGTAATATGCTTTTCTTCCCCCAGCTGCGTTGTGGAGACATGTCCACAGCAGCGAATATGGAAGTCATGTAGTATTACAGAAGAAGCTAGAAGCTAG 1152 44.44 MVAEAELIRQKTIPIPDIQIPIPIPVMNATLHHHHHLLLNGRPRDSSPTFLPDPISLFDSAVNCSDTMEDAHVDSTPVDFLPNIRSGSYADIGSRQSMDDEHVCIDDLSTHLDSVFKCSLPTGFYAVFDGHGGPHAATFLRNNALRLFFEDADWFKTIDTDSISLKDLENSHRRAFLLADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGVAVPMSQDHRPSSNLLELKRVQGMGGFVDDGYLNGYIAVTRALGDWDLKSPFGSSSPLIAEPQVEHVVLTKDDEFLVIACDGIWDVMSSQYAVSHVRRGLRKHNDPQQCAQELVLEALRLNTSDNLTAIVICFSSPSCVVETCPQQRIWKSCSITEEARS 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50127475 50128904 - evm.model.ptg000003l.18 HCH6g1774 547268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1774 383 SMART PP2C_SIG_2 100 356 IPR001932 -
HCH6g1774 383 PANTHER PROTEIN PHOSPHATASE 2C 68 356 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
HCH6g1774 383 Gene3D - 62 360 IPR036457 -
HCH6g1774 383 ProSiteProfiles PPM-type phosphatase domain profile. 85 356 IPR001932 -
HCH6g1774 383 SUPERFAMILY PP2C-like 79 357 IPR036457 -
HCH6g1774 383 SMART PP2C_4 75 354 IPR001932 -
HCH6g1774 383 Pfam Protein phosphatase 2C 93 348 IPR001932 -
HCH6g1774 383 CDD PP2Cc 84 356 IPR001932 -
HCH6g1774 383 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169(InterPro)
HCH6g1774 383 FunFam Probable protein phosphatase 2C 22 66 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1111 HCH-Chr4:7273095 HCH6g1774 HCH-Chr6:50127475 5.80E-108 dispersed
HCH4g1258 HCH-Chr4:8649790 HCH6g1774 HCH-Chr6:50127475 3.30E-28 dispersed
HCH6g1774 HCH-Chr6:50127475 HCH9g1262 HCH-Chr9:35875538 3.50E-28 dispersed
HCH6g1774 HCH-Chr6:50127475 HCH7g0133 HCH-Chr7:899353 1.40E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33808 PF00481 PP2C 2.00E-64 CL0238 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1774 K14803 - csv:101207477 531.176