Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1782 ATGGTATGGTATTGTGTTGGAGGGGAGGAAATGGCAACTGATCTCAACACTACACTCTCTAAGGAGACCTTTGTTTTTGGTTTAAAGTTATGGGTATTTACTGGAATCGCTTTAGCTCTTTTTATTATAATCATAATCATCATTCTGCTGGTGCTATCCATATCACGAAACAGGTCCACACGTGTAAATATGACTCTTCCCCTTACCCGAATTCCAAATGTATCGAAAGAAATCAAGGATATTGGAGTTGATCATGTTTCAGCTGCTGCGGCAGTCAAACATGGATTTCTCAATCTTAGTGTTCATGATAAATTCATCAGATTCAATGACAGAAAGTCAGAATCAGAAAAAGTTTTGCTATATTCCAACAAAGCATATAATTGCAGCATATCAGGCTCAGTCGTTGATCTCACAGAGAAAGATATCATTGCTTCTCAATTGGAAACCAAGAGACCTTCCATTCCAATCCCCGACCTTTCTAGTCCACTATCTGGTTTGTCTGAATTCTCACAGCTTGGTTGGGGTCACTGGTTTACTTTAAGAGAGCTGGAAATTGCAACGATGCAATTTTCTAATGAAAATATAATTGGCGAGGGAGGTTATGGAGTTGTTTATAGAGGTCATCTCATCAATGGGACATCTGTGGCTGTTAAAAAGCTCCTTAATCTTGGAGAAGCTGAAAAAGAATTCAGGGTGGAAGCTGAGGCACTTGGTCATGTGCGGCATAAGAACTTAGTTCGGCTTCTTGGCTACTGTATTGAGGGAATCCACAGGATATTAGTGTATGAGTATGTGGATAATGGGAATCTGGAACAGTGGCTTCATGGAGCTATGCGTCAGTATGGATATCTCACTTGGGAAGCACGCATCAAAATTCTTCTTGGTACTGCTAAGGCGTTGGCTTATTTGCACGAGGCAATCGAACCAAAAGTTGTGCATCGAGATATCAAGTCCAGCAATATATTGATTGACGATGACTTCAATGCAAAACTATCCGACTTTGGGCTAGCCAAATTACTAGGTGCTGGTAAAACTCATATTAATACCAGGGTTATGGGTACATTTGGATATGTGGCTCCAGAATATGCCAAATCCGGCCTTCTAAATGAGAAGAGCGATGTCTACAGCTTTGGAGTAGTTCTTTTGGAGGCAATTACTGGTAGAGAACCAGTAGATTACAGTCGATTAACGCATGAGGTAAATTTGGTGGATTGGCTAAAGATGATGGTAGGAAGCAGGCGTCCAGAAGAGGTAGTTGACCCAAAGATAGGGACAAAGCCATCTGTTAGTGCACTAAAACGAGCCCTTTTGACTGCTCTGAGATGTGTGGATCCAAATGCTAATAAAAGACCTAAGATGAGCCAAGTTGCTCGCATGCTTGAGTCTGAGGAATATCCAATACCTCGAGAGGATCGAAAACGTGAGACGAGGAAAATTGAGGCTGAGAAACGAGAGAAAGAACTTAGACGACACATATAG 1479 41.38 MVWYCVGGEEMATDLNTTLSKETFVFGLKLWVFTGIALALFIIIIIIILLVLSISRNRSTRVNMTLPLTRIPNVSKEIKDIGVDHVSAAAAVKHGFLNLSVHDKFIRFNDRKSESEKVLLYSNKAYNCSISGSVVDLTEKDIIASQLETKRPSIPIPDLSSPLSGLSEFSQLGWGHWFTLRELEIATMQFSNENIIGEGGYGVVYRGHLINGTSVAVKKLLNLGEAEKEFRVEAEALGHVRHKNLVRLLGYCIEGIHRILVYEYVDNGNLEQWLHGAMRQYGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKLSDFGLAKLLGAGKTHINTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGREPVDYSRLTHEVNLVDWLKMMVGSRRPEEVVDPKIGTKPSVSALKRALLTALRCVDPNANKRPKMSQVARMLESEEYPIPREDRKRETRKIEAEKREKELRRHI 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50169291 50171916 - evm.model.ptg000003l.10 HCH6g1782 547276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1782 492 ProSitePatterns Protein kinases ATP-binding region signature. 196 219 IPR017441 GO:0005524(InterPro)
HCH6g1782 492 ProSiteProfiles Protein kinase domain profile. 190 466 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1782 492 SMART serkin_6 190 460 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1782 492 Gene3D Transferase(Phosphotransferase) domain 1 265 478 - -
HCH6g1782 492 Gene3D Phosphorylase Kinase; domain 1 167 264 - -
HCH6g1782 492 CDD STKc_IRAK 196 461 - -
HCH6g1782 492 SUPERFAMILY Protein kinase-like (PK-like) 174 465 IPR011009 -
HCH6g1782 492 Pfam Protein kinase domain 191 457 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1782 492 MobiDBLite consensus disorder prediction 464 492 - -
HCH6g1782 492 FunFam serine/threonine-protein kinase PBS1-like 165 264 - -
HCH6g1782 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g1782 492 FunFam Putative receptor-like serine/threonine-protein kinase 265 476 - -
HCH6g1782 492 PANTHER OS01G0323000 PROTEIN 11 484 IPR052232 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1782 HCH-Chr6:50169291 HCH7g0046 HCH-Chr7:325328 1.10E-151 dispersed
HCH14g0192 HCH-Chr14:28144252 HCH6g1782 HCH-Chr6:50169291 1.30E-64 transposed
HCH6g1782 HCH-Chr6:50169291 HCH7g0995 HCH-Chr7:40803401 3.90E-54 wgd
HCH6g1782 HCH-Chr6:50169291 HCH8g0026 HCH-Chr8:1079082 5.90E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81610 PF00069 Pkinase 2.80E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1782 - - - 0.0