Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1785 ATGGTGGGCGTGGGCGTGGGCGTGAGAGGAAATAAGATCGATGAAAAGGAAAAGAAGTTGCATGTTGATCAAGATCAACGACGTATACGAGTAGGAAAGTACGAGGTGGGGAAGACTCTTGGCGAAGGCAATTTTGGAAAAGTTAAATTTGCTTTAAACTTAGAAACAGGAGAACCTTTTGCACTTAAGGTCCTCAACAAGAACAAAATCATTCATCTCAACATCGCCGATCAGATTAAAAGGGAAATAGGAAGCCTCAAACTTCTCAAGCATCCAAATGTAGTGAGGTTACATGAGGTGTTAGCCAGTAAAACCAAGATCTACATGGTCCTCGAGTACGTGACTGGCGGAGAATTATTTGATAGAATCGCCTCCAAGGGAAAATTATCAGAAGGTGAAGCCAGGAAAATCTTCCAACAGTTAATTGATGGTATCAGCTACTGCCATACAAAAGGCGTTTTCCACAGGGATCTCAAGCTAGAGAACATACTTGTTGATGCCAAGGGAAATATAAAGATATCTGATTTTGGTTTAAGTGCATTGCCCCAGCATTTTAGGGATGATGGTTTGCTTCATACGACCTGCGGAAGCCTCAATTACGTGGCACCCGAGGTACTCTCTAATAGAGGTTATGATGGTGTCACCTCTGACATATGGTCATGCGGTGTTATCTTATACGTTATTCTTTCTGGTTATCTCCCTTTCGATGATCGAAATCTCACCGTTCTATACCAAAAGATCTTTAAAGGAGACTATGAGGTAGCCAAGTGGATATCAAAGGGCGCCCAAAACTTGATGAGAAAGATTCTAGACCCAAACCCTATTTCTCGGATAAATATAGCAGCTATTAAAAGGGATGAGTGGTTTCAAAAGGACTACCATCCAAATCCACCTAATTCTCTTACTCTTACTCTTGATCATGAGGATCATGAAGAAATTATCATTAACACTTCAGATCCTTGTACTACCAGTAGTAGTATCCTTATAAATGCTTTTCAACTGATTGGAATGTCCTCATGGCTAGACCTTTCCGGTTTTTTTGAGAAAGAGGACGTTTCTGAGAGGAAGATCAGATTTACATCAAATCACTACTCTGCAAAAGAAGATCTCCTCAAAAGGATGGAGGATATTGTAACCCACATGGGATTTCTCGTCCACAACAAACAAGGAAAGTTGAAAGTGGTGAGGGAGGCTCAAAAGAATAGCCTATCCAGAATTTTATTGGTCTCAGCAGAGGTTTTTAAGATAACTCCATCATTATTCGTCGTAGAATTAATTAAATCATTTGGAGATTCATCTTCTTATAGACAGCTGTGTGAAATATTATCAGGTGATTTAGGTGTTCCGAGGCGAGAGTTGTAG 1362 40.31 MVGVGVGVRGNKIDEKEKKLHVDQDQRRIRVGKYEVGKTLGEGNFGKVKFALNLETGEPFALKVLNKNKIIHLNIADQIKREIGSLKLLKHPNVVRLHEVLASKTKIYMVLEYVTGGELFDRIASKGKLSEGEARKIFQQLIDGISYCHTKGVFHRDLKLENILVDAKGNIKISDFGLSALPQHFRDDGLLHTTCGSLNYVAPEVLSNRGYDGVTSDIWSCGVILYVILSGYLPFDDRNLTVLYQKIFKGDYEVAKWISKGAQNLMRKILDPNPISRINIAAIKRDEWFQKDYHPNPPNSLTLTLDHEDHEEIIINTSDPCTTSSSILINAFQLIGMSSWLDLSGFFEKEDVSERKIRFTSNHYSAKEDLLKRMEDIVTHMGFLVHNKQGKLKVVREAQKNSLSRILLVSAEVFKITPSLFVVELIKSFGDSSSYRQLCEILSGDLGVPRREL 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50189761 50192201 - evm.model.ptg000003l.7 HCH6g1785 547279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1785 453 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524(InterPro)
HCH6g1785 453 Gene3D Kinase associated domain 1, KA1 330 447 - -
HCH6g1785 453 Pfam Protein kinase domain 34 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1785 453 Pfam NAF domain 329 386 IPR004041 GO:0007165(InterPro)
HCH6g1785 453 FunFam Non-specific serine/threonine protein kinase 25 113 - -
HCH6g1785 453 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 22 436 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH6g1785 453 SMART serkin_6 34 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1785 453 Gene3D Transferase(Phosphotransferase) domain 1 25 329 - -
HCH6g1785 453 ProSiteProfiles Protein kinase domain profile. 34 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1785 453 ProSiteProfiles NAF domain profile. 324 348 IPR018451 GO:0007165(InterPro)
HCH6g1785 453 FunFam Non-specific serine/threonine protein kinase 324 448 - -
HCH6g1785 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g1785 453 FunFam Non-specific serine/threonine protein kinase 27 325 - -
HCH6g1785 453 CDD CIPK_C 330 440 - -
HCH6g1785 453 SUPERFAMILY Protein kinase-like (PK-like) 30 317 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1785 HCH-Chr6:50189761 HCH7g1747 HCH-Chr7:49176292 2.20E-114 dispersed
HCH9g0122 HCH-Chr9:669002 HCH6g1785 HCH-Chr6:50189761 4.00E-19 dispersed
HCH6g1785 HCH-Chr6:50189761 HCH7g0981 HCH-Chr7:40156758 6.20E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81611 PF00069 Pkinase 2.00E-71 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1785 K07198 - cit:102613698 610.142