Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0014 ATGTTCCATCAGAAGAAAGCTTCGAATATGAATTCTCATGAGAGAAGTATGTGTGTTCAAGGAGACTCTGGTCTTGTTCTGACCACAGACCCCAAACCACGCCTCCGTTGGACTGTTGAGCTTCATGAACGCTTTGTTGATGCTGTCACTCAGCTTGGAGGCCCTGATAAGGCTACACCTAAAACTATCATGAGAGTTATGGGTGTAAAGGGTCTTACTCTTTACCACCTCAAGAGCCACCTTCAGAAATTTAGACTGGGAAAACAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTTCAGGTTTAGAACTCCATCGAAACATAGCTTCTTCATCCAACATGATTAACCGCAGCATGAATGAGATGCAATTGGAGGTGCAGAGAAGATTGCATGAACAATTAGAGGTACAAAGACACCTACAATTGAGGATAGAGGCTCAAGGGAAATACATGCAAAGCATATTAGAAAAGGCTTGTCAAACCCTTGCCGGTGAAAACATGGCAGCTGCTGCTGGGGCCGGGGCCTATAAAGCCATGGGAATGGGAAACAATAATAATAATAATCAAGATTTTGCAGGTGGCCCTCTCAATGGCTTTCCTTCTTTTCAGGACCTCAACCTTTATGGCGGCTCAGGTGATGTTCAGCATAATATGGAGAGACCAACTTTGAATAATGGATTATTCATGCCTAACAATAACAATGACAATTTGTGCTTGGGAAAGAAGAAGCCAAGACCACAAAATAATTATGGCAGCAATGGGAAAGGTCCCTTGGATTGGCCTGATGATCTCAGGCTACAAGATATGGGAATGGCGCCACCCTCATGTGTGGGCCAAGGCCAACAAGAACTAGAACTAGAAGACGATTTCAAAGGCGAACCCCATGGCCATGGCAATAACCAGACATTGTCATTGGTGCAGGAAAGAGATCAGAATAATGATCATTTGGATTCGATCCAAGAAATGTATGAGTCAAAGCCAGTTATGTCAGAAGGTCATGGGATGGGAGACAAGAAATATGAAATGAATATTGCTTCTCTAAAGCTTCAAAGGCCATCACCTAGAAGGCCACCACTTTCAGCTGATAGGACCAACCAAAACCATGCTCATACTAATGCTCTTGCTCACCCCAGACACTCACCCTTTGCCTGA 1161 43.76 MFHQKKASNMNSHERSMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGSGLELHRNIASSSNMINRSMNEMQLEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAAAGAGAYKAMGMGNNNNNNQDFAGGPLNGFPSFQDLNLYGGSGDVQHNMERPTLNNGLFMPNNNNDNLCLGKKKPRPQNNYGSNGKGPLDWPDDLRLQDMGMAPPSCVGQGQQELELEDDFKGEPHGHGNNQTLSLVQERDQNNDHLDSIQEMYESKPVMSEGHGMGDKKYEMNIASLKLQRPSPRRPPLSADRTNQNHAHTNALAHPRHSPFA 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 143284 145030 - evm.model.ptg000013l.14 HCH7g0014 547299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0014 386 MobiDBLite consensus disorder prediction 245 285 - -
HCH7g0014 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 203 IPR046955 GO:0003700(InterPro)
HCH7g0014 386 Gene3D - 31 89 - -
HCH7g0014 386 FunFam Myb family transcription factor 31 89 - -
HCH7g0014 386 MobiDBLite consensus disorder prediction 362 376 - -
HCH7g0014 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
HCH7g0014 386 Pfam Myb-like DNA-binding domain 34 84 IPR001005 -
HCH7g0014 386 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677(InterPro)
HCH7g0014 386 MobiDBLite consensus disorder prediction 351 386 - -
HCH7g0014 386 Pfam MYB-CC type transfactor, LHEQLE motif 125 164 IPR025756 -
HCH7g0014 386 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0229 HCH-Chr5:1315845 HCH7g0014 HCH-Chr7:143284 2.80E-32 dispersed
HCH7g0014 HCH-Chr7:143284 HCH7g1427 HCH-Chr7:47007003 6.40E-38 dispersed
HCH9g1420 HCH-Chr9:46720663 HCH7g0014 HCH-Chr7:143284 8.90E-33 transposed
HCH9g1143 HCH-Chr9:15306445 HCH7g0014 HCH-Chr7:143284 2.50E-15 transposed
HCH2g0956 HCH-Chr2:52937380 HCH7g0014 HCH-Chr7:143284 1.70E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33812 PF00249 Myb_DNA-binding 2.10E-06 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0014 - - - 0.0