Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0014 ATGTTCCATCAGAAGAAAGCTTCGAATATGAATTCTCATGAGAGAAGTATGTGTGTTCAAGGAGACTCTGGTCTTGTTCTGACCACAGACCCCAAACCACGCCTCCGTTGGACTGTTGAGCTTCATGAACGCTTTGTTGATGCTGTCACTCAGCTTGGAGGCCCTGATAAGGCTACACCTAAAACTATCATGAGAGTTATGGGTGTAAAGGGTCTTACTCTTTACCACCTCAAGAGCCACCTTCAGAAATTTAGACTGGGAAAACAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTTCAGGTTTAGAACTCCATCGAAACATAGCTTCTTCATCCAACATGATTAACCGCAGCATGAATGAGATGCAATTGGAGGTGCAGAGAAGATTGCATGAACAATTAGAGGTACAAAGACACCTACAATTGAGGATAGAGGCTCAAGGGAAATACATGCAAAGCATATTAGAAAAGGCTTGTCAAACCCTTGCCGGTGAAAACATGGCAGCTGCTGCTGGGGCCGGGGCCTATAAAGCCATGGGAATGGGAAACAATAATAATAATAATCAAGATTTTGCAGGTGGCCCTCTCAATGGCTTTCCTTCTTTTCAGGACCTCAACCTTTATGGCGGCTCAGGTGATGTTCAGCATAATATGGAGAGACCAACTTTGAATAATGGATTATTCATGCCTAACAATAACAATGACAATTTGTGCTTGGGAAAGAAGAAGCCAAGACCACAAAATAATTATGGCAGCAATGGGAAAGGTCCCTTGGATTGGCCTGATGATCTCAGGCTACAAGATATGGGAATGGCGCCACCCTCATGTGTGGGCCAAGGCCAACAAGAACTAGAACTAGAAGACGATTTCAAAGGCGAACCCCATGGCCATGGCAATAACCAGACATTGTCATTGGTGCAGGAAAGAGATCAGAATAATGATCATTTGGATTCGATCCAAGAAATGTATGAGTCAAAGCCAGTTATGTCAGAAGGTCATGGGATGGGAGACAAGAAATATGAAATGAATATTGCTTCTCTAAAGCTTCAAAGGCCATCACCTAGAAGGCCACCACTTTCAGCTGATAGGACCAACCAAAACCATGCTCATACTAATGCTCTTGCTCACCCCAGACACTCACCCTTTGCCTGA 1161 43.76 MFHQKKASNMNSHERSMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGSGLELHRNIASSSNMINRSMNEMQLEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAAAGAGAYKAMGMGNNNNNNQDFAGGPLNGFPSFQDLNLYGGSGDVQHNMERPTLNNGLFMPNNNNDNLCLGKKKPRPQNNYGSNGKGPLDWPDDLRLQDMGMAPPSCVGQGQQELELEDDFKGEPHGHGNNQTLSLVQERDQNNDHLDSIQEMYESKPVMSEGHGMGDKKYEMNIASLKLQRPSPRRPPLSADRTNQNHAHTNALAHPRHSPFA 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 143284 145030 - evm.model.ptg000013l.14 HCH7g0014 547299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0014 386 MobiDBLite consensus disorder prediction 245 285 - -
HCH7g0014 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 203 IPR046955 GO:0003700(InterPro)
HCH7g0014 386 Gene3D - 31 89 - -
HCH7g0014 386 FunFam Myb family transcription factor 31 89 - -
HCH7g0014 386 MobiDBLite consensus disorder prediction 362 376 - -
HCH7g0014 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
HCH7g0014 386 Pfam Myb-like DNA-binding domain 34 84 IPR001005 -
HCH7g0014 386 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677(InterPro)
HCH7g0014 386 MobiDBLite consensus disorder prediction 351 386 - -
HCH7g0014 386 Pfam MYB-CC type transfactor, LHEQLE motif 125 164 IPR025756 -
HCH7g0014 386 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0014 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0229 HCH-Chr5:1315845 HCH7g0014 HCH-Chr7:143284 2.80E-32 dispersed
HCH7g0014 HCH-Chr7:143284 HCH7g1427 HCH-Chr7:47007003 6.40E-38 dispersed
HCH9g1420 HCH-Chr9:46720663 HCH7g0014 HCH-Chr7:143284 8.90E-33 transposed
HCH9g1143 HCH-Chr9:15306445 HCH7g0014 HCH-Chr7:143284 2.50E-15 transposed
HCH2g0956 HCH-Chr2:52937380 HCH7g0014 HCH-Chr7:143284 1.70E-93 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH5g0246 . 176 377 G2-like Transcription Factor Family AT5G16560 51.2 9.4e-40 161.4
HCH4g0682 . 1 183 G2-like Transcription Factor Family AT5G42630 59.5 8.3e-46 180.6
HCH12g0669 . 12 175 G2-like Transcription Factor Family AT5G42630 60.2 1.4e-40 163.3
HCH8g0792 . 3 339 G2-like Transcription Factor Family AT2G03500 50.4 6.0e-77 285.0
HCH1g0801 . 1 259 G2-like Transcription Factor Family AT1G25550 53.7 3.3e-52 202.2
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT1G25550 54.6 8.1e-51 197.6
HCH1g0801 . 19 269 G2-like Transcription Factor Family AT3G25790 50.2 2.6e-43 172.6
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT3G25790 51.3 6.0e-40 161.4
HCH3g1389 . 1 263 G2-like Transcription Factor Family AT3G46640 52.0 5.4e-54 208.4
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT5G05090 55.6 3.6e-72 268.5
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT5G05090 55.5 3.7e-69 258.5
HCH7g1427 . 13 309 G2-like Transcription Factor Family AT4G13640 53.3 4.6e-52 201.8
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH4g0893 . 6 230 G2-like Transcription Factor Family AT1G69580 55.9 2.0e-51 199.9
HCH7g0014 . 1 385 G2-like Transcription Factor Family AT1G79430 53.4 7.2e-84 307.8
HCH2g0956 . 1 363 G2-like Transcription Factor Family AT1G79430 56.3 4.7e-83 305.1
HCH7g1427 . 38 197 G2-like Transcription Factor Family AT1G79430 61.4 2.3e-37 153.3
HCH14g0730 . 54 292 G2-like Transcription Factor Family AT2G01060 60.9 2.1e-55 212.6
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT3G10760 61.3 2.2e-90 329.3
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT3G10760 61.3 1.6e-85 313.2
HCH9g0976 . 1 201 G2-like Transcription Factor Family AT2G40970 61.6 7.8e-61 230.7
HCH9g1278 . 1 201 G2-like Transcription Factor Family AT2G40970 58.3 4.3e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33812 PF00249 Myb_DNA-binding 2.10E-06 CL0123 HCH TF