Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0020 ATGTTAAAGATAGTACTATTTCTTGATATCATTCTCCTCCTTCTCTTCCTCCTCCCTGTTATAGTCTCTGGCCGGGAGTGTACTTGTGATTCCGATACCGACGAGCATAACAGAAGCAAAGCAATGAAATACAAGCTCGGTTCAATCGCTTCCGTACTCGTGGCGGGAGCTGTGGGGGTAAGCCTTCCTATACTAGGTAAGAAGATTCCTACACTAAGGCCTGAAAATGACATATTCTTCATGATCAAAGCTTTTGCTGCGGGAGTGATTCTGGGGACGGGGTTCATTCATATACTGCCTGATGCTTTTGAAGACTTGACATCGCCGTGCTTAGGGAAGAATCCTTGGGGCGATTTCCCATTTGCAGGATTCATTGCAATGGCTTCTTCCATTGGTACCTTAATGGTGGATACATTTGCAACCAGTTTTTATGAGAGAAGGCATTACAGTAAAACCAAGTTGCAGCAGGTAGTTGTAGATGAAGAGAGAGCTGGTCAGCATGCAAGTCACGTGCATGTACATACACATGCAACACATGGTCACTCTCATGGCTCAGCCTCTCCCTCGCCCTCCGCTGACGGAGAGTTGAGTCTGCCGGAGTTAATCCGGTATCGTATTATTTCGCAGGTGTTGGAACTGGGAATAGTGGTTCATTCAGTGATAATAGGGATATCTTTGGGTGCTTCTGAGAGCCCTGACACCATTAAGCCGCTCCTTGTAGCTCTGTCTTTCCACCAGTTTTTTGAAGGCATGGGACTTGGTGGTTGCATTTCTCAGGCACGATTCAGATGGCGGTCAACGGCAGTAATGGCGGCATTTTTCTCATTGACAGCGCCTGTGGGAATAGGAGTGGGAATGGGAATCTCAGGAGTATATAGAGAGAATAGCCGTACGGCACTAATAGTGGAAGGAACGATGAATTCAGCATCGGCTGGGATATTAATATACATGGCACTTGTTGACCTTCTGGCTGCAGATTTCATGAACCCAAGGATGCAAAGCAATTTGGGCCTTCAATTAGGAGCTAATCTCTCTCTCCTTCTTGGTGCTGCTTGCATGTCTGTTTTGGCCAAATGGGCTTAA 1083 46.54 MLKIVLFLDIILLLLFLLPVIVSGRECTCDSDTDEHNRSKAMKYKLGSIASVLVAGAVGVSLPILGKKIPTLRPENDIFFMIKAFAAGVILGTGFIHILPDAFEDLTSPCLGKNPWGDFPFAGFIAMASSIGTLMVDTFATSFYERRHYSKTKLQQVVVDEERAGQHASHVHVHTHATHGHSHGSASPSPSADGELSLPELIRYRIISQVLELGIVVHSVIIGISLGASESPDTIKPLLVALSFHQFFEGMGLGGCISQARFRWRSTAVMAAFFSLTAPVGIGVGMGISGVYRENSRTALIVEGTMNSASAGILIYMALVDLLAADFMNPRMQSNLGLQLGANLSLLLGAACMSVLAKWA 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 169414 170805 - evm.model.ptg000013l.20 HCH7g0020 547305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0020 360 NCBIfam ZIP zinc/iron transport family 27 360 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
HCH7g0020 360 PANTHER ZINC/IRON TRANSPORTER 39 359 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
HCH7g0020 360 MobiDBLite consensus disorder prediction 169 192 - -
HCH7g0020 360 Pfam ZIP Zinc transporter 43 357 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0935 HCH-Chr12:6364731 HCH7g0020 HCH-Chr7:169414 5.20E-98 dispersed
HCH3g0923 HCH-Chr3:8177614 HCH7g0020 HCH-Chr7:169414 3.60E-80 dispersed
HCH4g0535 HCH-Chr4:3474904 HCH7g0020 HCH-Chr7:169414 4.50E-71 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0020 K14709 - csv:101216720 470.314