Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0034 ATGGCGAGGACAGGAAGATCATCTTTAGTTTTCATTTTAACTGCTTTTATTTTCATCCACCTCCACTTGATTGCTCTTTCTCAAGCTCAGAATTCATCACAACCCATCACTGATCCTGATGAAGCAAGAGCTCTGAATTCCATATTTAGACAGTGGGGGATATCAGCTCAATCTGGGGTATGGAATATAAGTGGGAATCTATGCAGTGGGAGAGCAATCGATTCCACCGTCATCGAAGGAGATTTCAACCCTTTTATCAAATGCGATTGCTCTGTTGGAACTACTTGTCATATTACTCAATTGAGGGTTTATGCAATCAATGTTGTTGGTGTACTCCCGCCAGAACTATGGACGTTGACTTCCCTCACATTTCTGAAGGTGGATCAAAATTTCTTGACTGGGACACTATCTGCATCTGTTGGCAATCTCACGCAATTGCGAACCTTGAGCCTTGGCATCAATGCATTATCAGGGGAACTTCCAAGGGAACTTGGAGGTCTTTCTAATCTGAGACTACTGGCTTTTGGGTCCAACAATTTCTCTGGTTCCTTGCCTTCAGAACTTGGGAATCTTTCTATGTTAGAGGAACTGTACTTTGATAGCTCTGGAGTTGGTGGTGATATTCCTCCAACATTTTCGAGTCTAAATAATTTACGTATTGTATGGGCGTCAGACAATGAACTCACTGGGAGAATACCTGATTTCATTGGGAGTTGGACAGGGCTCACAACTTTGAGGTTTCAGGGAAACTCTTTTACGGGTCCTATACCGTCGTCATTTTCAAATTTGACATCTATGACTGAGTTGAGAATAAGTGATTTATCCAATGGGAGCTCTTCACTGGCATTCATCAGGAATATGAGATCTCTCACTATTTTGGTGTTGAGAAATAACAATGCATCAGATTCGATTCCATCCAATATTGGAGAATTTCAAAGACTGACCCAGCTGGACTTGAGCTTCAACAACTTAACAGGACAGATTCCAGAGTCGCTTTTTAATTTGAGTTCACTAACACACTTGTTTCTTGGAAATAACAAGTTACGTGGTACCATTCCTACACGAAAGAGTGCATCTCTTGGCAATATAGACTTGTCATATAATGATTTATCAGGGAACTTTCCTTCTTGGATCAACCAGCAAAACTTACAGATTAATTTAGTTGCCAACAACTTCACCATAGGAAGTTCAAATAGCAGTGGTTTGCCTTCGGGGCTGCACTGTCTTCAACGCAACTTTCCTTGTAATCGGGGTCGTGGAATATATTCTGATTTTGGGATCAAGTGTGGAGGTCCACAGATTACAAGTTCCTCTGGAATTAGGTTTGAAAGGGAAAATGAGACTCTTGGTCCTGCTACATACTTTGTTACGGATACAAATAGGTGGGCCATTAGTAATGTTGGATACTTTACGGGGACCAATGATCCTGTTTACAGAGGCAGCACATTATCTCAATTTGCAAACACTGTTGATCCAGAGCTTTTTCAAACACAGCGTCTATCTGCTTCATCATTGAGATACTATGGGCTGGGGCTAGAAAATGGAAACTACACTGTGAAGCTTCAGTTTGCAGAAATAGCTTTCCCAGATGCATCTAGATGGGAAAGCCGCGGGAGGCGTGTCTTTGATATATATATCCAGGGGAATCGGGTCTTAGAGAATTTTGACATTCGAAAGAAGGCGGGTGGGTCTTTTCTTGTTGTTGAAGAGCAATTTACAGCTCAAGTTTCAGAAAACTTCCTAGAAATTCATCTTTTTTGGGCTGGAAAAGGTACTTGCTGCATACCTACTCAAGGTACTTATGGACCTGCTGTTTCAGCCATCAGTGCTACCCCAGATTTTGTACCAACTGTTCGTAACATACCTCCAAGTACTGGCGAGAATAGAACCGGGCTAATTGTGGGGGTTGTTGTAGGTGTAGGATCTGTTGTCTTTCTGATTATTGCTGCATTTTTCATTATTGTCCATAGAAGAAGAAAACGCCGTGCCTATGAAGATGAAGAGCTCCTAGGAATAGACGCAAGACCATATTTGTTTAATTATTCAGAACTAAAGGGTGCTACAGAGGATTTTAATTCATCCAACAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTACAAGGGAAGACTAAGTGATGGAAGAGTGATTGCTGTAAAGCAACTTTCTGTAGCATCTCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGCCACAATATCTGCAGTGCAACATCGTAACCTCGTGAAATTGTACGGATGTTGCATTGAGGGCAGCAAACGTCTCCTTGTTTATGAATATCTTGAAAACAAGAGTCTCGACCAAGCATTATTTGGAACACGAAATTTGACTCTTGATTGGCCAACGCGTTTTGATATATGCTTGGGTGTGGCAAGAGGTCTTGCTTATCTTCACGAGGAATCTAGACTGCGAATTGTGCACAGAGATGTAAAGGCCAGTAACATTCTGCTGGATGGTGATCTAATCCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACCCGTGTTGCCGGGACAATTGGTTATCTTGCGCCCGAGTATGCCATGCGTGGCCACTTAACAGAGAAGGCTGATGTCTTTGGATTTGGTGTTGTGGCTCTAGAAATTGTTAGTGGAAGACCAAATTCAGACCCAAGCTTGGAGCAAGACAAAGTTTATCTTCTTGAATGGGCATGGAACCTTCACGAAAATAACTGTGAAACTGAGATGGTGGATTCTGAATTATCAGAATTCAGTGAGGAAGAAGTAAAACGGGTGATCGGAATAGCTCTTTTGTGCACTCAAACATCCCCTGGGCTTCGTCCATCGATGTCCCGTGTGGTGGCAATGCTGAGTGGAGATATGGAAGTGGCCACTGTAACTTCCAAACCAGGGTACTTAACAGACTGGAAATTTGACGATGTTACGAGCTTTATAGATAATGCATCAACTGAAGAACCAGACATGGGCCATTACACCTCGACAAGTACGAGTAGGATCGATCCAAAGCACTCGCCCCTCAATGTTTCTGAACCAATGCTTCGTGGATTATTAGGGGAGGGTAGGTGA 3093 42.39 MARTGRSSLVFILTAFIFIHLHLIALSQAQNSSQPITDPDEARALNSIFRQWGISAQSGVWNISGNLCSGRAIDSTVIEGDFNPFIKCDCSVGTTCHITQLRVYAINVVGVLPPELWTLTSLTFLKVDQNFLTGTLSASVGNLTQLRTLSLGINALSGELPRELGGLSNLRLLAFGSNNFSGSLPSELGNLSMLEELYFDSSGVGGDIPPTFSSLNNLRIVWASDNELTGRIPDFIGSWTGLTTLRFQGNSFTGPIPSSFSNLTSMTELRISDLSNGSSSLAFIRNMRSLTILVLRNNNASDSIPSNIGEFQRLTQLDLSFNNLTGQIPESLFNLSSLTHLFLGNNKLRGTIPTRKSASLGNIDLSYNDLSGNFPSWINQQNLQINLVANNFTIGSSNSSGLPSGLHCLQRNFPCNRGRGIYSDFGIKCGGPQITSSSGIRFERENETLGPATYFVTDTNRWAISNVGYFTGTNDPVYRGSTLSQFANTVDPELFQTQRLSASSLRYYGLGLENGNYTVKLQFAEIAFPDASRWESRGRRVFDIYIQGNRVLENFDIRKKAGGSFLVVEEQFTAQVSENFLEIHLFWAGKGTCCIPTQGTYGPAVSAISATPDFVPTVRNIPPSTGENRTGLIVGVVVGVGSVVFLIIAAFFIIVHRRRKRRAYEDEELLGIDARPYLFNYSELKGATEDFNSSNKLGEGGFGPVYKGRLSDGRVIAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGTRNLTLDWPTRFDICLGVARGLAYLHEESRLRIVHRDVKASNILLDGDLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKVYLLEWAWNLHENNCETEMVDSELSEFSEEEVKRVIGIALLCTQTSPGLRPSMSRVVAMLSGDMEVATVTSKPGYLTDWKFDDVTSFIDNASTEEPDMGHYTSTSTSRIDPKHSPLNVSEPMLRGLLGEGR 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 244029 252989 + evm.model.ptg000013l.34 HCH7g0034 547319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0034 1030 Gene3D Transferase(Phosphotransferase) domain 1 767 971 - -
HCH7g0034 1030 Pfam Malectin domain 426 608 IPR021720 -
HCH7g0034 1030 SUPERFAMILY Protein kinase-like (PK-like) 675 993 IPR011009 -
HCH7g0034 1030 MobiDBLite consensus disorder prediction 992 1012 - -
HCH7g0034 1030 MobiDBLite consensus disorder prediction 992 1017 - -
HCH7g0034 1030 Gene3D Phosphorylase Kinase; domain 1 665 766 - -
HCH7g0034 1030 SMART serkin_6 691 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0034 1030 FunFam Os05g0263100 protein 42 276 - -
HCH7g0034 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0034 1030 SUPERFAMILY L domain-like 94 396 - -
HCH7g0034 1030 FunFam Putative LRR receptor-like serine/threonine-protein kinase 767 971 - -
HCH7g0034 1030 Gene3D - 425 612 - -
HCH7g0034 1030 FunFam Leucine-rich repeat receptor-like protein kinase 660 766 - -
HCH7g0034 1030 FunFam Putative LRR receptor-like serine/threonine-protein kinase 277 400 - -
HCH7g0034 1030 Pfam Leucine rich repeat 288 348 IPR001611 GO:0005515(InterPro)
HCH7g0034 1030 Pfam Leucine Rich Repeat 242 263 IPR001611 GO:0005515(InterPro)
HCH7g0034 1030 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 22 985 IPR051824 GO:0005886(PANTHER)
HCH7g0034 1030 Gene3D Ribonuclease Inhibitor 38 278 IPR032675 -
HCH7g0034 1030 Pfam Protein tyrosine and serine/threonine kinase 694 958 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0034 1030 ProSiteProfiles Protein kinase domain profile. 691 965 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0034 1030 CDD STKc_IRAK 697 959 - -
HCH7g0034 1030 Gene3D Ribonuclease Inhibitor 279 411 IPR032675 -
HCH7g0034 1030 FunFam Leucine-rich repeat receptor-like protein kinase 422 612 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0639 HCH-Chr6:38236753 HCH7g0034 HCH-Chr7:244029 4.20E-93 dispersed
HCH7g0034 HCH-Chr7:244029 HCH7g0069 HCH-Chr7:456461 1.30E-149 dispersed
HCH9g0694 HCH-Chr9:4620381 HCH7g0034 HCH-Chr7:244029 1.50E-66 dispersed
HCH7g0034 HCH-Chr7:244029 HCH12g0989 HCH-Chr12:7186492 5.90E-147 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81612 PF07714 PK_Tyr_Ser-Thr 9.80E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0034 - - - 0.0