Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0046 ATGTCGTCTGAAAGTTCTTTGAATACGGAATTGTCAAAGAAAACTTCCTTCCTGGGTTTGTCCTTGTGGGTTTTGATCTGCTTATGTGTTGGAGCATTTATCGTTCTGATTCTTGGTATCTTATCTGTATGGGTGATGTTTCGAAGAAAAACAAGGAGATCCCCAGATAGTTTCTCTATTTCTCAAATACCAAATGTCTCAAAGGATATTAAAGTAGACAGAATAGCAACCCAATCTGCCCACAATCATCTTGAGAATTTTTATCTTTCCATTCATGACAAATCGAGTGATAAGAACTCAGAGAAGATGATAGGTCAACTGGGTATGAGCAAGTCGAGTGATCCTGATAACATAAGCCAATGCAGCTCCAATTATCATTATGAAAGGGTTTTTAGTTCACATTCAGGAGAAGAAGGAAGCTCCGGTACTGGTCGAAAGCAATCTTCCTTATCATATGGAGGGTATGGAGGGCTTGCAACGGCCTCTCCTCTAGTGGGCTTGCCTGAAATTTCACATCTTGGTTGGGGCCACTGGTTTACACTCAGGGATCTGGAATTTGCAACAAGTCGTTTCTGTGCAGACAATGTGCTTGGTGAAGGGGGTTATGGGGTTGTCTATAAGGGCAGACTGATCAATGGAACTGAGGTTGCAGTGAAGAAACTTCTCAATAATCTGGGGCAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATTGGTCATGTAAGACACAAGAATCTTGTTCGACTCTTGGGCTATTGCATAGAAGGAATCCATAGGATGCTGGTTTATGAATATGTGAACAATGGTAACTTAGAACAATGGCTACATGGGGCGATGCGCCATCATGGCACCCTTACCTGGGAGGCACGGATGAAGGTGCTTCTTGGTACTGCCAAGGCGCTAGCATATTTACATGAAGCAATTGAACCGAAGGTTGTCCATAGAGACATAAAATCAAGCAATATCTTAATCGATGATGAATTTAATGCAAAGGTTTCTGATTTTGGATTGGCCAAACTGTTGGACTCAGGAGAGAGTCACATCACGACTAGAGTGATGGGGACATTTGGATATGTGGCACCTGAATATGCCAACTCTGGCTTGTTAAATGAAAAAAGCGACATTTATAGCTTTGGTGTCCTCCTCCTAGAAGCAATTACTGGAAGGGACCCTGTGGACTATGGCCGTCCTGCTAATGAGGTTAACCTTGTTGAGTGGTTAAAGGTGATGGTTGGCACAAGAAGAGCCGAGGAAGTTATAGACCTAAATCTTGAAATTAAACCTACTACACGTGCTTTGAAACGTGCCCTTCTAATTGCACTGAGGTGTGTGGATCCTGAAGCCGATAAGAGACCAAAAATGACTCAAGTTGTTAGGATGCTTGAAGCTGATGAATACCCATCACGTGAGGATCGTAGGAGTCAAAAGAGCCGAACAACGAGCATTGAAATTGAAACCACGAAAGAAGTCTCAGGTTCAGCCGAGATCGAAAGCAAGCTAGTAACTGAATCGGAAACCCTTGAAGTTGAATCAGCGACAACTCAATCAGTTAGACTTGCCAACACATGA 1572 42.88 MSSESSLNTELSKKTSFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPDSFSISQIPNVSKDIKVDRIATQSAHNHLENFYLSIHDKSSDKNSEKMIGQLGMSKSSDPDNISQCSSNYHYERVFSSHSGEEGSSGTGRKQSSLSYGGYGGLATASPLVGLPEISHLGWGHWFTLRDLEFATSRFCADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGIHRMLVYEYVNNGNLEQWLHGAMRHHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDLNLEIKPTTRALKRALLIALRCVDPEADKRPKMTQVVRMLEADEYPSREDRRSQKSRTTSIEIETTKEVSGSAEIESKLVTESETLEVESATTQSVRLANT 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 325328 328485 + evm.model.ptg000013l.46 HCH7g0046 547331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0046 523 MobiDBLite consensus disorder prediction 485 523 - -
HCH7g0046 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0046 523 Gene3D Phosphorylase Kinase; domain 1 173 266 - -
HCH7g0046 523 FunFam Putative receptor-like protein kinase 173 266 - -
HCH7g0046 523 MobiDBLite consensus disorder prediction 466 523 - -
HCH7g0046 523 Pfam Protein kinase domain 195 460 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0046 523 PANTHER OS01G0323000 PROTEIN 5 492 IPR052232 -
HCH7g0046 523 FunFam Putative receptor-like serine/threonine-protein kinase 267 477 - -
HCH7g0046 523 ProSitePatterns Protein kinases ATP-binding region signature. 197 220 IPR017441 GO:0005524(InterPro)
HCH7g0046 523 ProSiteProfiles Protein kinase domain profile. 191 449 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0046 523 CDD STKc_IRAK 197 463 - -
HCH7g0046 523 SUPERFAMILY Protein kinase-like (PK-like) 175 467 IPR011009 -
HCH7g0046 523 Gene3D Transferase(Phosphotransferase) domain 1 267 481 - -
HCH7g0046 523 SMART serkin_6 191 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0046 523 MobiDBLite consensus disorder prediction 466 484 - -
HCH7g0046 523 Coils Coil 211 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0958 HCH-Chr10:14908058 HCH7g0046 HCH-Chr7:325328 2.30E-159 dispersed
HCH6g1782 HCH-Chr6:50169291 HCH7g0046 HCH-Chr7:325328 1.10E-151 dispersed
HCH7g0046 HCH-Chr7:325328 HCH8g0026 HCH-Chr8:1079082 9.60E-178 dispersed
HCH11g0765 HCH-Chr11:37128415 HCH7g0046 HCH-Chr7:325328 2.30E-53 wgd
HCH2g0908 HCH-Chr2:52568230 HCH7g0046 HCH-Chr7:325328 3.60E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81613 PF00069 Pkinase 7.80E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0046 - - - 0.0