Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0047 ATGTCCAATGATGGAGGAAAAATTCCCTACCAGCACTATGATCCTTTCTTCTACAACCAGCTTGATATCAACCGTCCATGCTTTCCATTTCCCAACGACAACGACGATCCATCGATCTTCAATCAACAACCGCCGCCCGTGGCCGCAGCAATATCTTCACAAACACCATTTGATCATCCTTCTTACATGAGCTTCACAAACTTCTTCGATACTTCCATGGACTACAACACCCTTTCAAAAGCCTTCGACATGTCGTGCTCATCATCTGAAGTCGTTTCTCCGGTCGACGACAACTCGAAGAAGCCGGCTGCTGCTGTCGGAGAGTTGGCAGCAGCAGCAGCAACCGGCACAAGTTTGAACCAATCGACACCGAATTCGTCGGTGTCTTCTTCGTCGAATGAGGCAGCAGCTGAAGATGATTCAGTCAAGAGTAAGAAAGAAGAAGAGTCAGTCACAAAAGTGTGTGAGAATAATGAAGATCATGAAGAAAAGTCTAAGAAACACAAACAGAACAATCCGAAGCAAAAAGAGAAAAGGAAAAGGGAGCCCCGCTTTGCTTTCTTGACTAAGAGCGAGATTGATCACCTTGAAGATGGATATAGATGGAGAAAATATGGTCAGAAAGCAGTCAAGAACAGTCCTTACCCCAGAAGCTACTACAGATGCACAAGTCAAAAATGCATTGTGAAGAAACGAGTTGAAAGATCATACCAAGACCCATCTGTGGTGATAACTACATATGAAGGCCAACATAACCACCATTGTCCAGCTACACTCAGAGGACATTCTGCTGGAATGATGTCTCCAGCTTCCTTTTTGGGATCGGCATCGGTATCGGTATCGGCAGCCTCCTCCGGGCATGGCCTTCCTCACCATGAACTCTTCTCTCATTTGGACCCAGCCAGTTCAATGATGTATCATCAGAATCTCAATCTCCAACAGCAACTCCAGATTCCTGATCATTTTGGTTTATTGCATGATTTATTTACTCAAAAATAG 999 44.74 MSNDGGKIPYQHYDPFFYNQLDINRPCFPFPNDNDDPSIFNQQPPPVAAAISSQTPFDHPSYMSFTNFFDTSMDYNTLSKAFDMSCSSSEVVSPVDDNSKKPAAAVGELAAAAATGTSLNQSTPNSSVSSSSNEAAAEDDSVKSKKEEESVTKVCENNEDHEEKSKKHKQNNPKQKEKRKREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCIVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGMMSPASFLGSASVSVSAASSGHGLPHHELFSHLDPASSMMYHQNLNLQQQLQIPDHFGLLHDLFTQK 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 332760 335183 - evm.model.ptg000013l.47 HCH7g0047 547332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0047 332 Coils Coil 158 178 - -
HCH7g0047 332 ProSiteProfiles WRKY domain profile. 191 256 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0047 332 MobiDBLite consensus disorder prediction 138 185 - -
HCH7g0047 332 FunFam WRKY transcription factor 57 182 256 - -
HCH7g0047 332 SMART WRKY_cls 196 255 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0047 332 Gene3D WRKY domain 181 257 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0047 332 MobiDBLite consensus disorder prediction 116 185 - -
HCH7g0047 332 MobiDBLite consensus disorder prediction 116 137 - -
HCH7g0047 332 SUPERFAMILY WRKY DNA-binding domain 189 256 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0047 332 Pfam WRKY DNA -binding domain 197 254 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0047 332 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 112 264 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1044 HCH-Chr14:37573823 HCH7g0047 HCH-Chr7:332760 5.70E-42 dispersed
HCH6g1759 HCH-Chr6:50053472 HCH7g0047 HCH-Chr7:332760 9.50E-36 dispersed
HCH7g0047 HCH-Chr7:332760 HCH7g1019 HCH-Chr7:41611714 3.70E-34 dispersed
HCH2g0907 HCH-Chr2:52563592 HCH7g0047 HCH-Chr7:332760 1.10E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33815 PF03106 WRKY 7.00E-25 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0047 - - - 0.0