Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0055 ATGTTATGTGGAGGATTCTGGAAGGAGATTAAGGAGGGATTCTGGTTTTATCATCAGGAGCGGGGATTTAGTGTTCTGGGAATTGGGTTTTGGGAGATTGTTGAAATGCAGTCTGATTACCGCAGAAAGGGTTCAACGGAATTGGAATTTTTCTCTGAATATGGTGATGCCAACAGATTCAAAATTCAGGAAGTTGTTGGGAAGGGAAGTTATGGTGTGGTTTGTTCAGCAGTTGATACCCTCACTAATGAAAAAGTGGCAATAAAGAAGATACGTGATATTTTTGAACATATATCTGATGCTGCCCGTATTCTTCGTGAGATAAAGCTGCTCAGACTTCTACGTCATCCTGATATTGTCGAAATTAAACACATTATTCTACCATCTTCTCGAAGGGACTTCAAAGATATTTTTGTTGTATTTGAGTTGATGGAATCAGATTTGCATCAAGTAATCAAAGCCAATGATGATTTAACGCGAGAGCACTATCAATTTTTCCTCTACCAGCTACTCCGTGCATTGAAATATATACACACAGCAAACGTTTACCACCGGGATTTGAAACCGAAGAATATATTGGCAAATGCAAATTGCAAACTCAAAATCTGTGATTTCGGATTAGCTAGGGTTGCTTTCAATGACGCCCCAACAACAATATTTTGGACGGACTATGTTGCTACTAGATGGTATAGGGCTCCAGAGCTCTGTGGTTCTTTCTTCTCTAAGTATACCCCTGCCATTGATATTTGGAGTATCGGCTGCATATTTGCTGAAGTGCTCATTGGGAAGCCACTTTTTCCTGGTAAAAATATTGTTCATCAGCTTGATTTGATGACTGACCTCCTTGGAACGCCTTCATTAGATACCATTTCTCGGGTAAGAAATGAAAAGGCTAGGAGGTATCTAACTAGCATGAGGAAGAAGCAGCCCATACCCTTTTCACAAAAGTTTCCAAATGCAGATCCTCTAGCCCTGCGATTGCTAGAACGATTACTTGCTTTTGATCCGAAGGATCGACCTACCGCTGAAGAGGCATTAGCCGATCCTTATTTCAAGGGGCTGGCAAAAGTTGAAAGAGAACCTTCTTGCCAACCAATTTCAAAGATGGAGTTTGAATTTGAGAGGAGAAAGGTCACAAAGGAAGACATCCGAGAGCTAATATTTCGTGAGATACTAGAGTACCATCCTCAACTACTGAAAGATTACTTAAATGGAACTGAGAGAACAAATTTTCTTTATCCAAGTGCCATTGATCAGTTCAGAAAGCAATTCGCTCATCTTGAAGAAAACGAAGGGAAAAGTGGACCTGATTTTCCTCTTGAAAGAAAGCATGCATCTCTTCCTAGGTCCACAGTACATACAAATACCATAACTCCTAAGGAAACATCAGATGCCGTGTCATCTAAAGACCGATATGCTCCAGCAGGGTCGTACATCCAGCATTGTAAATATCTAGAACGACATTCTACAAATCTTGCAAGGATTTCACAAGCACCCCAGAGGATTGTTGCTACACAAGCCAAGCCTGGAAGAATTGTTGGCCCGGTTGTACCATATGAAAGAGGGGGTGTCGTGAAAGATGCCTACGATCCGAGAATATTTATTAGAAGCGCAGTCCCTTCTAATGCTGTCCATCCGACATATTATTACCGCCAACCCTGTGGCCAAAATCAAGAAACAGCAACAACAACGGGGGCGGAGCAGGACAATAATAAACAGGCCTCTCAATGTGGCATTACAGCGAAATTAGCGGAAGATACAGCAGCTAAGGGTGTTGTCTCGAATCCTTTTTTCATGACACGGGCAGGAGTGCCCAAGGTCGGACATAACGACCGTACTCCTGATTCGAAACTTTTGCAGGTAAATGCGCAATATGGTGTTGCGACCACGCACAAGAAAGTCGGAGCAGTCGAGTATGAATTGACGAGAATGCATTAA 1938 42.11 MLCGGFWKEIKEGFWFYHQERGFSVLGIGFWEIVEMQSDYRRKGSTELEFFSEYGDANRFKIQEVVGKGSYGVVCSAVDTLTNEKVAIKKIRDIFEHISDAARILREIKLLRLLRHPDIVEIKHIILPSSRRDFKDIFVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDAPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLIGKPLFPGKNIVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPIPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPISKMEFEFERRKVTKEDIRELIFREILEYHPQLLKDYLNGTERTNFLYPSAIDQFRKQFAHLEENEGKSGPDFPLERKHASLPRSTVHTNTITPKETSDAVSSKDRYAPAGSYIQHCKYLERHSTNLARISQAPQRIVATQAKPGRIVGPVVPYERGGVVKDAYDPRIFIRSAVPSNAVHPTYYYRQPCGQNQETATTTGAEQDNNKQASQCGITAKLAEDTAAKGVVSNPFFMTRAGVPKVGHNDRTPDSKLLQVNAQYGVATTHKKVGAVEYELTRMH 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 379128 383318 + evm.model.ptg000013l.55 HCH7g0055 547340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0055 645 ProSiteProfiles Protein kinase domain profile. 60 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0055 645 FunFam Mitogen-activated protein kinase 146 374 - -
HCH7g0055 645 ProSitePatterns MAP kinase signature. 95 198 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0055 645 MobiDBLite consensus disorder prediction 430 448 - -
HCH7g0055 645 SMART serkin_6 60 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0055 645 Gene3D Phosphorylase Kinase; domain 1 75 397 - -
HCH7g0055 645 CDD STKc_TDY_MAPK 59 396 - -
HCH7g0055 645 Gene3D Transferase(Phosphotransferase) domain 1 146 374 - -
HCH7g0055 645 MobiDBLite consensus disorder prediction 430 470 - -
HCH7g0055 645 ProSitePatterns Protein kinases ATP-binding region signature. 66 90 IPR017441 GO:0005524(InterPro)
HCH7g0055 645 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 58 392 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
HCH7g0055 645 FunFam Mitogen-activated protein kinase 50 153 - -
HCH7g0055 645 MobiDBLite consensus disorder prediction 449 463 - -
HCH7g0055 645 Pfam Protein kinase domain 61 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0055 645 SUPERFAMILY Protein kinase-like (PK-like) 57 355 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0615 HCH-Chr6:36974428 HCH7g0055 HCH-Chr7:379128 8.30E-218 dispersed
HCH6g1629 HCH-Chr6:49363903 HCH7g0055 HCH-Chr7:379128 5.30E-206 dispersed
HCH7g0055 HCH-Chr7:379128 HCH8g1125 HCH-Chr8:46964354 2.70E-198 dispersed
HCH11g0743 HCH-Chr11:36188735 HCH7g0055 HCH-Chr7:379128 1.30E-187 wgd
HCH2g0905 HCH-Chr2:52532151 HCH7g0055 HCH-Chr7:379128 2.10E-253 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81614 PF00069 Pkinase 3.00E-65 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0055 - - - 0.0