Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0069 ATGGGGCACAGGTTTGCATTTCAAAATCATCATACAAAACCCAGAAAATCCCATTTTCTCTCTTTAATTTTACTCATAGTTTCCTTTGCAAGCTTTGGATTAGCAGCCACTTCCATACCCAAACTTCAAAGAGATGAAGTGAAAGCATTGAGAGAAATTGGGAAGAAACTGGGGAAAAATGATTGGAATTTTACTCAAAATCCTTGCAATGAAGAAGGAAATTGGTATGTCATTAATGGCAGAAAAGGCTTTGAAAGTACAGTCACCTGCAACTGCAGTTTTAATCGTAATTCCACTTGCCACGTCATAAGCATAGCTTTGAAATCCCAGAATCTATCTGGCATTGTGCCACCCGAGTTATCTAAGCTTCGTTACCTCAAACAACTAGACCTTAGTCGAAACTGTCTCACAGGTTCTGTTCCTTCCCAATGGGCTACGATGCGATTGGTAGAACTCTCTTTCATGGGGAACAAATTGTCGGGTCCGTTCCCGAAAGTACTTACGAATATTACCACCCTCAGAAACTTGAGTATCGAAGGAAATCAATTTTCCGGCCCACTTCCACCGGAGATCGGAAAGCTAATCAATTTGCAGAAATTCGTTCTAGCATCAAATGCCTTAACTGGAGAATTGCCACCGGCACTAGCTAAGCTGTCCAACTTAGTTGATATGAGGATAAGTGATAACAACTTCTCTGGAAAGATACCCGAGTTCATTAGTAATTGGACACAAATCGAAAAACTGCATATACAAGGTTGCTCCCTCAAGGGGCCCATTCCTTCAAGTATTGCCACCATGACGAGTTTATCTGATCTGAGAATATCTGATTTGAAAGGTGGAGAGTCTACTTTTCCACCATTGAGTAAAATGGAATCCATGAAGACGTTGATACTGAGGAAGTGCTTGATTGTTGGAGAAATCCCCAAATACATTGGGAACATAAAGAAATTGAAGAACTTAGACCTCAGCTATAACGACTTGACTGGTGAAGTTCCAGCATCTTTCAGCCAGTTAGAAAAAATAGATTACATATATTTGACAGGAAACAAGCTCAATGGAGTAATTCCTGGATGGATTCTTGGAAGCAACAAGAATGTGGATCTTTCGAACAATAATTTCACTTGGGAAAGCTCGAGCCCAGCTGAGTGTCCTCGAGGGAGCGTAAATTTTGTGGAGACCTATTCCCCATCTGCAGATGAAGTACCTAGAATTCATCCCTGCCTAAAGAGGAACTTCCCTTGTTCTGCATCTGATGAACAGCATCGCTACTCCTTGCACATTAACTGTGGCGGTAAAGAAGCATTTATGAATGGTGACAAGTATGAAGCAGATAGAGAAGGCGCTTCGATGTTTTATACTGGTCGGAATTGGGCCTTCAGCACCACCGGTAGCTTTATGGACAATGATGTTGATGCTGATAACTATATCATAACGAATACATCAGCTCTTTCAAATGTCTCTGTCAATGATTCAGAATTGTACACAAGAGCAAGAATTTCTCCTCAGTCTCTCACATATTATGGGCTTTGTCTCATCAATGGGAACTACACTGTTAGACTCCACTTTGCAGAGATTGTATTTATAAACGACAGTTCATTCAATAGCCTCGGAAAACGAATTTTTGACGTGTACGTCCAGGAAAAGTTAGTCCTCAAAGATTTCAATATAGAAAATGAAGCAGGGGGTACAGGCAAGCCTATTATAAAAACATTCACCGCTGTTGTCACGAGTCATACATTGAAGATCCATTTCTACTGGGCTGGAAGAGGGACAACAGGAATCCCCATTAGAGGGAATTATGGTCCTCTGATATCAGCTATTCAAGTAGATCCTAATTTTACGCCTCCTGTGAACCATGTGAAGAAGAATCACACCGTCATAATTGTTGGGACAACGGCTGCAACACTTATTCTCATTCTTCTTGTGTTAGGCATTATGAGGATGAAGGGATGGTTGGGAGGCAACTCTGCAACATATAAGGAACTCAGAGGTATAGACCTGCAAACAGGATTATTTACAATAAGACAGATTAAAGCAGCCACTAAGAATTTTGATGCTGCAAACAAAGTTGGGGAAGGCGGTTTTGGTGCAGTTTATAAGGGTCTTTTGTCCGATGGCGCTGTAATTGCAGTCAAGCAGCTGTCGTCGAAATCAAAACAAGGAAACCGTGAGTTTGTTAATGAAATAGGCATGATATCTGCACTGCAACATCCAAATCTTGTCAAGCTTTATGGCTGTTGTGTTGATGGGAACCAATTGATGTTGGTTTACGAATACATGGAAAATAATTGTTTATCGCGTGCCCTTTTTCGAAATGACCCAGCACATAGATTGAGATTGGATTGGCCTACCAGGAAGAAAATTTGCTTAGGTATAGCTAGAGGTTTGGCCTATCTACATGAGGAGTCGAGATTAAAAATTGTACATAGGGATATCAAGACAAGTAATGTGTTGCTTGATAAAGATTTCAATGCTAAAATTTCCGATTTTGGTTTGGCTAAGCTTCATGAGGATGAGAATACTCATATCAGCACCCGAATCGCGGGAACCATTGGTTATATGGCGCCTGAATATGCAATGCGCGGATGCTTGACCAGCAAAGCTGATGTTTATAGCTTTGGAGTCGTTGCACTGGAAATTGTTAGTGGCAAAAGCAATACCAACTACAGGCCCAAGGAGGAGTTTGTTTACCTTCTTGACTGGGCATCTGTTTTGCAAGAAAAAGGAAGTCTATTGGAATTGGTGGATCCAAGTTTAGGGTCAAATTATTCATCAGAAGAGGCAATGGTGATGTTAAATGTGGCTCTGTTATGCACCAATGCATCTCCTACACTTAGGCCTCTAATGTCCCAAGTGGTCAGCATGCTTGAAGGAAGAACTCCAGTACAAGACCTTCTTTCAGATCCTGGATTTTCAGCCATTAATTCCAAATTGAAAGCTCTTAGAAATCACTTTTGGCAGCAATTAAGCCCCACTCATAGTTTATCATTGGGAGAATTGAGAACTGATTCCTTGAGTTCATATGTGGAATCAGAGGAGATAGGCCAGCTTTTGAGAGACCCTTCTGTTGAATCTGATCCATGA 3084 41.08 MGHRFAFQNHHTKPRKSHFLSLILLIVSFASFGLAATSIPKLQRDEVKALREIGKKLGKNDWNFTQNPCNEEGNWYVINGRKGFESTVTCNCSFNRNSTCHVISIALKSQNLSGIVPPELSKLRYLKQLDLSRNCLTGSVPSQWATMRLVELSFMGNKLSGPFPKVLTNITTLRNLSIEGNQFSGPLPPEIGKLINLQKFVLASNALTGELPPALAKLSNLVDMRISDNNFSGKIPEFISNWTQIEKLHIQGCSLKGPIPSSIATMTSLSDLRISDLKGGESTFPPLSKMESMKTLILRKCLIVGEIPKYIGNIKKLKNLDLSYNDLTGEVPASFSQLEKIDYIYLTGNKLNGVIPGWILGSNKNVDLSNNNFTWESSSPAECPRGSVNFVETYSPSADEVPRIHPCLKRNFPCSASDEQHRYSLHINCGGKEAFMNGDKYEADREGASMFYTGRNWAFSTTGSFMDNDVDADNYIITNTSALSNVSVNDSELYTRARISPQSLTYYGLCLINGNYTVRLHFAEIVFINDSSFNSLGKRIFDVYVQEKLVLKDFNIENEAGGTGKPIIKTFTAVVTSHTLKIHFYWAGRGTTGIPIRGNYGPLISAIQVDPNFTPPVNHVKKNHTVIIVGTTAATLILILLVLGIMRMKGWLGGNSATYKELRGIDLQTGLFTIRQIKAATKNFDAANKVGEGGFGAVYKGLLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCVDGNQLMLVYEYMENNCLSRALFRNDPAHRLRLDWPTRKKICLGIARGLAYLHEESRLKIVHRDIKTSNVLLDKDFNAKISDFGLAKLHEDENTHISTRIAGTIGYMAPEYAMRGCLTSKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWASVLQEKGSLLELVDPSLGSNYSSEEAMVMLNVALLCTNASPTLRPLMSQVVSMLEGRTPVQDLLSDPGFSAINSKLKALRNHFWQQLSPTHSLSLGELRTDSLSSYVESEEIGQLLRDPSVESDP 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 456461 465345 - evm.model.ptg000013l.69 HCH7g0069 547354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0069 1027 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 242 389 - -
HCH7g0069 1027 ProSiteProfiles Protein kinase domain profile. 684 971 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0069 1027 ProSitePatterns Protein kinases ATP-binding region signature. 690 712 IPR017441 GO:0005524(InterPro)
HCH7g0069 1027 Pfam Protein tyrosine and serine/threonine kinase 687 901 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0069 1027 CDD STKc_IRAK 690 958 - -
HCH7g0069 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0069 1027 Pfam Leucine Rich Repeat 220 242 IPR001611 GO:0005515(InterPro)
HCH7g0069 1027 Pfam Leucine Rich Repeat 126 145 IPR001611 GO:0005515(InterPro)
HCH7g0069 1027 Pfam Leucine Rich Repeat 173 194 IPR001611 GO:0005515(InterPro)
HCH7g0069 1027 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 654 759 - -
HCH7g0069 1027 SMART serkin_6 684 954 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0069 1027 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 48 211 - -
HCH7g0069 1027 Pfam Malectin domain 424 607 IPR021720 -
HCH7g0069 1027 SUPERFAMILY L domain-like 91 374 - -
HCH7g0069 1027 FunFam Putative LRR receptor-like serine/threonine-protein kinase 760 968 - -
HCH7g0069 1027 Gene3D Phosphorylase Kinase; domain 1 655 759 - -
HCH7g0069 1027 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 22 966 IPR051824 -
HCH7g0069 1027 SUPERFAMILY Protein kinase-like (PK-like) 668 957 IPR011009 -
HCH7g0069 1027 Gene3D Transferase(Phosphotransferase) domain 1 760 965 - -
HCH7g0069 1027 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 422 612 - -
HCH7g0069 1027 Gene3D - 420 611 - -
HCH7g0069 1027 Gene3D Ribonuclease Inhibitor 81 244 IPR032675 -
HCH7g0069 1027 Gene3D Ribonuclease Inhibitor 245 384 IPR032675 -
HCH7g0069 1027 Pfam Leucine rich repeat 293 351 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0622 HCH-Chr6:37425742 HCH7g0069 HCH-Chr7:456461 2.70E-224 dispersed
HCH7g0034 HCH-Chr7:244029 HCH7g0069 HCH-Chr7:456461 1.30E-149 dispersed
HCH7g0069 HCH-Chr7:456461 HCH7g0221 HCH-Chr7:1485491 9.30E-76 dispersed
HCH7g0069 HCH-Chr7:456461 HCH12g0989 HCH-Chr12:7186492 1.80E-233 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81615 PF07714 PK_Tyr_Ser-Thr 3.20E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0069 - - - 0.0