Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0082 ATGTCTACCGCCGTCGAAGTCGACGCCGGTGATGGCCACCTTCATAGCATTCATTCCGCCGTTCTAAGTAACCTTTCCAATGGAGATAACTGTGAGAATGATAATATCGCTGGAGAAGACGTCTTCGTTCCTCCGCTAAACTTCGCCGTCGTCGACAATGGCATTTTCCGATCAGGCTTCCCGGACCCTTCTAACTTCTCATTTCTTCAGACTTTAGGCCTTCGTTCCATTATATGCCTCTGTCCGGAGCCATATCCTGAGGCAAGTATGGATTTTCTCAAGTCCAATGGGATCAGATTGTTCCAATTCGGAATTGAAGGTTCTAAGGCTTGTTCAGACAAGGTTGATGCATATGTAAACTTGATTCTCGACTGTATGAGGAATTTGGATATGGGCAATGACCATATTTACTATATGGAGCCTTTTGTGAACATTCCAGACAATACAATTCGTGAGGCACTTAAAATTATCCTTGATGTGAGAAATCGTCCCGTTTTGATTCATTGTAAACGAGGAAAGCATCGAACTGGTTGTGTTGTTGGATGCTTCAGAAAGTTACAAAAATGGTGTTTATCATCAGTTTTTGATGAGTACCAGCGGTTCGCCGCCGCAAAGGCGAGAGTTTCAGATCAGAGGTTCATAGAGTTATTTGATGTTTCTGGCTTGAAGCATCTGCCATCATAA 684 43.42 MSTAVEVDAGDGHLHSIHSAVLSNLSNGDNCENDNIAGEDVFVPPLNFAVVDNGIFRSGFPDPSNFSFLQTLGLRSIICLCPEPYPEASMDFLKSNGIRLFQFGIEGSKACSDKVDAYVNLILDCMRNLDMGNDHIYYMEPFVNIPDNTIREALKIILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDVSGLKHLPS 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 549090 551349 + evm.model.ptg000013l.82 HCH7g0082 547367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0082 227 PANTHER TYROSINE-PROTEIN PHOSPHATASE 35 226 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
HCH7g0082 227 Gene3D Protein tyrosine phosphatase superfamily 41 221 IPR029021 -
HCH7g0082 227 Pfam Tyrosine phosphatase family 43 221 IPR004861 -
HCH7g0082 227 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 218 IPR029021 -
HCH7g0082 227 ProSitePatterns Tyrosine specific protein phosphatases active site. 167 177 IPR016130 GO:0016311(InterPro)
HCH7g0082 227 ProSiteProfiles Dual specificity protein phosphatase domain profile. 47 227 IPR020422 GO:0006470(InterPro)
HCH7g0082 227 PRINTS Plant and fungal dual specificity phosphatase signature 79 92 IPR020428 GO:0016791(InterPro)
HCH7g0082 227 PRINTS Plant and fungal dual specificity phosphatase signature 98 112 IPR020428 GO:0016791(InterPro)
HCH7g0082 227 PRINTS Plant and fungal dual specificity phosphatase signature 145 159 IPR020428 GO:0016791(InterPro)
HCH7g0082 227 PRINTS Plant and fungal dual specificity phosphatase signature 42 59 IPR020428 GO:0016791(InterPro)
HCH7g0082 227 CDD PFA-DSP_Siw14 42 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0082 HCH-Chr7:549090 HCH8g0272 HCH-Chr8:14877322 3.80E-54 dispersed
HCH2g0875 HCH-Chr2:52313633 HCH7g0082 HCH-Chr7:549090 2.10E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0082 K18045 - csv:101209768 300.441