Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0108 ATGGCTTCCTCTAAAGAACGCGAGAACTTCGTCTACACCGCTAAGCTTGCTGAACAAGCCGAGCGTTACGATGAAATGGTGGATGCAATGAAGAATGTTGCAAAGCTTGATGTTGAATTGACGGTTGAGGAACGGAATTTGCTTTCTGTTGGATACAAGAATGTGGTTGGTGCTCGGAGAGCCTCGTGGAGGATTTTATCATCAATAGAGCAGAAGGAAGAAGCGAAAGGGAATGAAGTAAATGCGAAACGTATCAAGGAATATAGACACAAGGTTGAAACGGAGCTCTCGACTATATGTAGTGATATTATGACAGTGATTGATGAGCATCTAATTCCCTCAGCTTCAGCTGGGGAATCGACAGTGTTTTATTATAAGATGAAGGGAGATTATTATCGTTACCTTGCAGAATTTACTTCAGGTAATGAGAAGAAAGAGGCGGCTGATCAATCGATGAAAGCATACGAGGCTGCAACCGGTTCAGCTGAATCTGAATTACCTCCTACTCATCCTATCCGCTTGGGTTTGGCATTAAATTTCTCTGTCTTCTATTATGAAATCTTGAATTCACCCGAAAGGGCCTGCCACCTTGCAAAGCAAGCTTTTGATGAAGCTATCTCTGAACTTGACACCCTGAATGAAGAGTCATACAAAGATAGCACCTTAATTATGCAGCTTCTTAGGGACAACCTTACCTTGTGGACTTCTGATATCCCAGAAGATGGAGAAGATGTCCAAAAGATCAACGGCACTGCCAAGGTTTCTGGTGGTGATGACGCAGAGTGA 786 43.13 MASSKERENFVYTAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVVGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRHKVETELSTICSDIMTVIDEHLIPSASAGESTVFYYKMKGDYYRYLAEFTSGNEKKEAADQSMKAYEAATGSAESELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGEDVQKINGTAKVSGGDDAE 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 670533 672998 - evm.model.ptg000013l.108 HCH7g0108 547393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0108 261 PIRSF 14-3-3 1 247 IPR000308 -
HCH7g0108 261 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
HCH7g0108 261 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
HCH7g0108 261 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
HCH7g0108 261 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
HCH7g0108 261 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
HCH7g0108 261 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
HCH7g0108 261 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
HCH7g0108 261 Pfam 14-3-3 protein 13 235 IPR023410 -
HCH7g0108 261 Gene3D - 1 249 IPR036815 -
HCH7g0108 261 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
HCH7g0108 261 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
HCH7g0108 261 SMART 1433_4 7 248 IPR023410 -
HCH7g0108 261 FunFam 14-3-3 protein epsilon 2 248 - -
HCH7g0108 261 PANTHER 14-3-3 PROTEIN 6 240 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
HCH7g0108 261 Coils Coil 195 215 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0880 HCH-Chr1:57324888 HCH7g0108 HCH-Chr7:670533 2.20E-106 dispersed
HCH4g0146 HCH-Chr4:811055 HCH7g0108 HCH-Chr7:670533 2.20E-106 dispersed
HCH4g0218 HCH-Chr4:1302109 HCH7g0108 HCH-Chr7:670533 7.30E-107 dispersed
HCH7g0108 HCH-Chr7:670533 HCH9g0347 HCH-Chr9:2161383 1.20E-93 dispersed
HCH7g0108 HCH-Chr7:670533 HCH12g0259 HCH-Chr12:1439879 6.20E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0108 K06630 - csv:101208446 486.878