Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0117 ATGGAAATAGAAGAAGACGATTACCGAAGAAAAGAGCAGCTTGCATTAGTAGCTATTGTAGTTCTAGCATCACTCGCTTTATTTTCTTTGCTCGTCGCTTTTAGCTATTACTGCTATATCAGTAATAAGGTTTCTAAGCGCCTCAAGATCCATAAAAGAGTAGATCGTGAAGATAGAGTTAGTTATGAAAATGTCGAAGTTACTACTGAGAAAGGGATTCAACTGTTCACCTTCAAGCAGCTACACTCAGCAACTGGTGGTTTTAGTAAGTCAAATGTGGTTGGGCAGGGTAGTTTTGGGTTTGTATACCGAGGAGTCCTCAATGATGGGAGGAAAGTTGCAATTAAGTTCATGGATCAAGCAGGGAAGCAGGGAGAGGACGAATTTAAAGTGGAGGTGGAGCTGTTAAGTCGGCTTCATTCCCCATATTTGTTGGCATTGCTTGGATATTGCTCAGATAACAATCATAAATTGCTGGTGTATGAATTCATGGCAAATGGGGGTCTGCAAGAACATCTGTACCCCATTAGAAGTTCAAATGCTGTCAACATTAAATTGGACTGGGATAAACGGTTGAGAGTTGCTCTTGAGGCCGCCAAAGGTTTGGAGTATTTACATGAACATGTAAGTCCCCCAGTCATTCATAGGGATTTTAAGAGCAGCAATGTCCTGTTGGACAGAAATCTCCACGCCAAGGTTTCTGATTTTGGATTGGCAAAGATTGGCTCAGACAAAGCTGGGGGGCATGTCTCCACTCGAGTTTTGGGGACCCAGGGATATGTTGCTCCCGAGTATGCGTTAACAGGGCATTTAACAACAAAGTCGGATGTATACAGTTATGGGGTCGTCCTCTTGGAGCTGCTTACAGGCAGAGTGCCAGTCGATATGAAGAGAACTCCTGGGGAAGCTTCCCTTGTTTCTTGGGCTTTGCCTAGGCTAACAGATAGGGAGAAGGTGGTCCATATAATGGATCCTGCACTGGAGGGTCAGTACTCCATGAAGGATGCTGTCCAAGTCGCAGCGATTGCTGCAATGTGTGTTCAACCGGAGGCAGATTACAGGCCACTGATGGCCGATGTCGTCCAGTCGCTGGTTCCGCTGGTGAAAAATCACAGGTCAACTTCAAAGATTGGCAGCAGCTCTAGTTCCAGCACTACCAAGTCACCTATAGCACACGATTTTGGCAATGTCGGTTTGGGAGACTGA 1206 45.36 MEIEEDDYRRKEQLALVAIVVLASLALFSLLVAFSYYCYISNKVSKRLKIHKRVDREDRVSYENVEVTTEKGIQLFTFKQLHSATGGFSKSNVVGQGSFGFVYRGVLNDGRKVAIKFMDQAGKQGEDEFKVEVELLSRLHSPYLLALLGYCSDNNHKLLVYEFMANGGLQEHLYPIRSSNAVNIKLDWDKRLRVALEAAKGLEYLHEHVSPPVIHRDFKSSNVLLDRNLHAKVSDFGLAKIGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRTPGEASLVSWALPRLTDREKVVHIMDPALEGQYSMKDAVQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKNHRSTSKIGSSSSSSTTKSPIAHDFGNVGLGD 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 761567 764038 + evm.model.ptg000013l.117 HCH7g0117 547402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0117 401 CDD STKc_IRAK 94 367 - -
HCH7g0117 401 FunFam Receptor-like serine/threonine-protein kinase ALE2 164 383 - -
HCH7g0117 401 ProSitePatterns Protein kinases ATP-binding region signature. 94 116 IPR017441 GO:0005524(InterPro)
HCH7g0117 401 Gene3D Transferase(Phosphotransferase) domain 1 164 388 - -
HCH7g0117 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0117 401 ProSiteProfiles Protein kinase domain profile. 88 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0117 401 FunFam Serine/threonine-protein kinase PBS1 56 163 - -
HCH7g0117 401 SUPERFAMILY Protein kinase-like (PK-like) 68 364 IPR011009 -
HCH7g0117 401 Pfam Protein tyrosine and serine/threonine kinase 91 364 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0117 401 PANTHER OS01G0750732 PROTEIN 16 387 IPR050885 -
HCH7g0117 401 MobiDBLite consensus disorder prediction 372 391 - -
HCH7g0117 401 MobiDBLite consensus disorder prediction 372 401 - -
HCH7g0117 401 Gene3D Phosphorylase Kinase; domain 1 47 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0001 HCH-Chr4:34203 HCH7g0117 HCH-Chr7:761567 4.40E-73 dispersed
HCH4g1273 HCH-Chr4:8778717 HCH7g0117 HCH-Chr7:761567 2.60E-75 dispersed
HCH7g0117 HCH-Chr7:761567 HCH8g0133 HCH-Chr8:5392505 2.00E-114 dispersed
HCH7g0915 HCH-Chr7:35769243 HCH7g0117 HCH-Chr7:761567 2.50E-64 dispersed
HCH11g1170 HCH-Chr11:43882851 HCH7g0117 HCH-Chr7:761567 8.50E-33 transposed
HCH3g0718 HCH-Chr3:5151688 HCH7g0117 HCH-Chr7:761567 4.10E-45 wgd
HCH3g0710 HCH-Chr3:5088338 HCH7g0117 HCH-Chr7:761567 1.90E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81616 PF07714 PK_Tyr_Ser-Thr 5.40E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0117 - - - 0.0