Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH7g0117 | ATGGAAATAGAAGAAGACGATTACCGAAGAAAAGAGCAGCTTGCATTAGTAGCTATTGTAGTTCTAGCATCACTCGCTTTATTTTCTTTGCTCGTCGCTTTTAGCTATTACTGCTATATCAGTAATAAGGTTTCTAAGCGCCTCAAGATCCATAAAAGAGTAGATCGTGAAGATAGAGTTAGTTATGAAAATGTCGAAGTTACTACTGAGAAAGGGATTCAACTGTTCACCTTCAAGCAGCTACACTCAGCAACTGGTGGTTTTAGTAAGTCAAATGTGGTTGGGCAGGGTAGTTTTGGGTTTGTATACCGAGGAGTCCTCAATGATGGGAGGAAAGTTGCAATTAAGTTCATGGATCAAGCAGGGAAGCAGGGAGAGGACGAATTTAAAGTGGAGGTGGAGCTGTTAAGTCGGCTTCATTCCCCATATTTGTTGGCATTGCTTGGATATTGCTCAGATAACAATCATAAATTGCTGGTGTATGAATTCATGGCAAATGGGGGTCTGCAAGAACATCTGTACCCCATTAGAAGTTCAAATGCTGTCAACATTAAATTGGACTGGGATAAACGGTTGAGAGTTGCTCTTGAGGCCGCCAAAGGTTTGGAGTATTTACATGAACATGTAAGTCCCCCAGTCATTCATAGGGATTTTAAGAGCAGCAATGTCCTGTTGGACAGAAATCTCCACGCCAAGGTTTCTGATTTTGGATTGGCAAAGATTGGCTCAGACAAAGCTGGGGGGCATGTCTCCACTCGAGTTTTGGGGACCCAGGGATATGTTGCTCCCGAGTATGCGTTAACAGGGCATTTAACAACAAAGTCGGATGTATACAGTTATGGGGTCGTCCTCTTGGAGCTGCTTACAGGCAGAGTGCCAGTCGATATGAAGAGAACTCCTGGGGAAGCTTCCCTTGTTTCTTGGGCTTTGCCTAGGCTAACAGATAGGGAGAAGGTGGTCCATATAATGGATCCTGCACTGGAGGGTCAGTACTCCATGAAGGATGCTGTCCAAGTCGCAGCGATTGCTGCAATGTGTGTTCAACCGGAGGCAGATTACAGGCCACTGATGGCCGATGTCGTCCAGTCGCTGGTTCCGCTGGTGAAAAATCACAGGTCAACTTCAAAGATTGGCAGCAGCTCTAGTTCCAGCACTACCAAGTCACCTATAGCACACGATTTTGGCAATGTCGGTTTGGGAGACTGA | 1206 | 45.36 | MEIEEDDYRRKEQLALVAIVVLASLALFSLLVAFSYYCYISNKVSKRLKIHKRVDREDRVSYENVEVTTEKGIQLFTFKQLHSATGGFSKSNVVGQGSFGFVYRGVLNDGRKVAIKFMDQAGKQGEDEFKVEVELLSRLHSPYLLALLGYCSDNNHKLLVYEFMANGGLQEHLYPIRSSNAVNIKLDWDKRLRVALEAAKGLEYLHEHVSPPVIHRDFKSSNVLLDRNLHAKVSDFGLAKIGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRTPGEASLVSWALPRLTDREKVVHIMDPALEGQYSMKDAVQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKNHRSTSKIGSSSSSSTTKSPIAHDFGNVGLGD | 401 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 761567 | 764038 | + | evm.model.ptg000013l.117 | HCH7g0117 | 547402 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH7g0117 | 401 | CDD | STKc_IRAK | 94 | 367 | - | - | |
HCH7g0117 | 401 | FunFam | Receptor-like serine/threonine-protein kinase ALE2 | 164 | 383 | - | - | |
HCH7g0117 | 401 | ProSitePatterns | Protein kinases ATP-binding region signature. | 94 | 116 | IPR017441 | GO:0005524(InterPro) | |
HCH7g0117 | 401 | Gene3D | Transferase(Phosphotransferase) domain 1 | 164 | 388 | - | - | |
HCH7g0117 | 401 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 213 | 225 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH7g0117 | 401 | ProSiteProfiles | Protein kinase domain profile. | 88 | 368 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH7g0117 | 401 | FunFam | Serine/threonine-protein kinase PBS1 | 56 | 163 | - | - | |
HCH7g0117 | 401 | SUPERFAMILY | Protein kinase-like (PK-like) | 68 | 364 | IPR011009 | - | |
HCH7g0117 | 401 | Pfam | Protein tyrosine and serine/threonine kinase | 91 | 364 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH7g0117 | 401 | PANTHER | OS01G0750732 PROTEIN | 16 | 387 | IPR050885 | - | |
HCH7g0117 | 401 | MobiDBLite | consensus disorder prediction | 372 | 391 | - | - | |
HCH7g0117 | 401 | MobiDBLite | consensus disorder prediction | 372 | 401 | - | - | |
HCH7g0117 | 401 | Gene3D | Phosphorylase Kinase; domain 1 | 47 | 163 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g0001 | HCH-Chr4:34203 | HCH7g0117 | HCH-Chr7:761567 | 4.40E-73 | dispersed | |
HCH4g1273 | HCH-Chr4:8778717 | HCH7g0117 | HCH-Chr7:761567 | 2.60E-75 | dispersed | |
HCH7g0117 | HCH-Chr7:761567 | HCH8g0133 | HCH-Chr8:5392505 | 2.00E-114 | dispersed | |
HCH7g0915 | HCH-Chr7:35769243 | HCH7g0117 | HCH-Chr7:761567 | 2.50E-64 | dispersed | |
HCH11g1170 | HCH-Chr11:43882851 | HCH7g0117 | HCH-Chr7:761567 | 8.50E-33 | transposed | |
HCH3g0718 | HCH-Chr3:5151688 | HCH7g0117 | HCH-Chr7:761567 | 4.10E-45 | wgd | |
HCH3g0710 | HCH-Chr3:5088338 | HCH7g0117 | HCH-Chr7:761567 | 1.90E-27 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81616 | PF07714 | PK_Tyr_Ser-Thr | 5.40E-44 | CL0016 | HCH | PK |
Pathway information
