Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0118 ATGGCTTCTTCCATTTCCCACATCTTTATTATCACTCTCTCTCTCTTAGCTTTCTCTTCAAATGCTCAACTTTCTCCCAACTTCTACTCAACAACATGTCCCAATCTTCTATCCATCGTTCGTTCTGCTATGAACCAAGCTGTTTCTGGAGAGCAACGCCTTGCTGCTTCTATCCTTCGCTTGTTCTTCCATGATTGCTTCGTAAACGGCTGTGATGGCTCTATACTACTTGACGACACATCGACATTTATAGGCGAAAAGAACGCATTTCCAAACAGGAATTCAGCGAGAGGGTTCGGTGTTATAGACACCATTAAAACTCAGGTGGAAGCTGTCTGCAACGCCACCGTTTCCTGCGCTGATATTCTCGCACTCGCTACACGAGATGGGGTCGTTGCGCTTGGAGGACCTACTTGGACAGTACCATTAGGCAGGAAAGACTCAAGAACAGCAAGCCAAAGCGCGGCCAACAACAACCTTCCTGGCCCAGCCTCCTCCCTCTCAACCCTAATCTCCATGTTCAACGCCCAAGGCCTTAACCCCCGCGACATGACCGCCCTCTCCGGTGCCCACACCATCGGTTTCGGCCAATGTTCCTTTTTCCGAACCCGTATTTACAACGAATCCAACATCGATCAGACCTTCGCCTCCCAACGCCGAGCCAATTGTCCCTTTACTGGTGGTGACACCAACTTAGCTCCACTGGACGGAACACCGACCCGGTTCGACATCCGTTACTACAACGACCTTGTAGGCCGCCGTGGTCTATTTCATTCCGACCAAGAACTCTTCAACGGAGGCTCTCAAGATGCATTGGTCCGTATGTATAGTACGAACCAAGCACTCTTTTTTAGAGATTTTGTTAGTGCGATGATTAAGATGGGGAACCTTGCTCCTTCTTCTGGGACACCTACTGAAATTAGAAGAAATTGCAGATTGGTGAACTAA 948 48.73 MASSISHIFIITLSLLAFSSNAQLSPNFYSTTCPNLLSIVRSAMNQAVSGEQRLAASILRLFFHDCFVNGCDGSILLDDTSTFIGEKNAFPNRNSARGFGVIDTIKTQVEAVCNATVSCADILALATRDGVVALGGPTWTVPLGRKDSRTASQSAANNNLPGPASSLSTLISMFNAQGLNPRDMTALSGAHTIGFGQCSFFRTRIYNESNIDQTFASQRRANCPFTGGDTNLAPLDGTPTRFDIRYYNDLVGRRGLFHSDQELFNGGSQDALVRMYSTNQALFFRDFVSAMIKMGNLAPSSGTPTEIRRNCRLVN 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 769221 771367 + evm.model.ptg000013l.118 HCH7g0118 547403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0118 315 PRINTS Plant peroxidase signature 249 266 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 PRINTS Plant peroxidase signature 289 302 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 PRINTS Plant peroxidase signature 233 248 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 PANTHER PEROXIDASE 72-RELATED 11 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 SUPERFAMILY Heme-dependent peroxidases 23 315 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
HCH7g0118 315 ProSiteProfiles Plant heme peroxidase family profile. 23 315 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 CDD secretory_peroxidase 23 314 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH7g0118 315 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
HCH7g0118 315 FunFam Peroxidase 161 294 - -
HCH7g0118 315 Gene3D - 27 312 - -
HCH7g0118 315 Pfam Peroxidase 40 279 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 Gene3D Peroxidase, domain 2 161 294 - -
HCH7g0118 315 FunFam Peroxidase 27 168 - -
HCH7g0118 315 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH7g0118 315 PRINTS Haem peroxidase superfamily signature 235 250 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1220 HCH-Chr13:39707400 HCH7g0118 HCH-Chr7:769221 5.20E-73 dispersed
HCH2g0988 HCH-Chr2:53162068 HCH7g0118 HCH-Chr7:769221 3.50E-90 dispersed
HCH3g1495 HCH-Chr3:52974922 HCH7g0118 HCH-Chr7:769221 1.50E-88 dispersed
HCH3g1496 HCH-Chr3:52981851 HCH7g0118 HCH-Chr7:769221 4.50E-88 dispersed
HCH5g0711 HCH-Chr5:5156946 HCH7g0118 HCH-Chr7:769221 5.70E-67 dispersed
HCH5g0712 HCH-Chr5:5165344 HCH7g0118 HCH-Chr7:769221 7.00E-65 dispersed
HCH6g1760 HCH-Chr6:50057948 HCH7g0118 HCH-Chr7:769221 3.30E-70 dispersed
HCH7g0118 HCH-Chr7:769221 HCH8g0835 HCH-Chr8:44859352 1.40E-51 dispersed
HCH3g0684 HCH-Chr3:4827869 HCH7g0118 HCH-Chr7:769221 2.10E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0118 K00430 - csv:101208932 491.5