Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0124 ATGAATCGCCGTATCCGTACAGACCCATTTCTCTCCGAGCAAGATGATCCTGAACCCACGTCAGAAGATGGCTTGCCGGAGCCGGAATCACCCTCCGCCGGAAATGAATCAAAATTCGCCGCCGCATCACCTCTCAAAAAAAGTAGAAGAGGAGTTCAGAAAAGAGTGGTGTCAGTGCCGATCGGTGACGTGGAAGGATCTAAAGGAAAAGGGGAAGCATATCCACCGTCGGATTCATGGGCATGGAGAAAATATGGCCAAAAGCCCATCAAAGGATCTCCATATCCCAGGGGATATTATCGATGTAGTAGCTCCAAGGGCTGCCCGGCCAGAAAGCAAGTAGAAAGAAGCCGTGTGGACCCCACAACGCTCGTTATTACCTACGCTTTCGATCACAACCACCAACTCCCTGCCACCAAATCCCACCACCACTCTCCCGCCGCCGCCATCATCGCATCTCCTCCCAGAAGCACCACCACGTCATCCTCCACGTCATCCGCCGATCAAAACACCACCCCCACGACCACCACATCACTCTCTCCGGCCGAATTTCAACCGGAGGTCATGCTGGAACTCGAACTCGACGGTGAGTCGCCGTTTAAATCATTCATCGGCGATTTCGGGTGGTTGGCTGACGTGGCGTACGACAGAATCATGGAGGGCCCGATTTCCGCGGGAAACGACATGTTCGACGACGCCGACGTAATGGTTTTGTCGAGTAGAGGAGGAGATGACGAGGAAGAGTCTTTATTCGCAGATCTCGAGGAATTACCCGAGGGTTCAGTTATTTTCGGTCGAAGATCGGTCCGACCGCCAGAACCGAACCGGATGTTTAGTAGTAGTAGCAGCGTTTTAAACTACTAG 864 52.89 MNRRIRTDPFLSEQDDPEPTSEDGLPEPESPSAGNESKFAAASPLKKSRRGVQKRVVSVPIGDVEGSKGKGEAYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTTLVITYAFDHNHQLPATKSHHHSPAAAIIASPPRSTTTSSSTSSADQNTTPTTTTSLSPAEFQPEVMLELELDGESPFKSFIGDFGWLADVAYDRIMEGPISAGNDMFDDADVMVLSSRGGDDEEESLFADLEELPEGSVIFGRRSVRPPEPNRMFSSSSSVLNY 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 825256 827125 + evm.model.ptg000013l.124 HCH7g0124 547409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0124 287 MobiDBLite consensus disorder prediction 1 80 - -
HCH7g0124 287 SUPERFAMILY WRKY DNA-binding domain 73 137 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0124 287 Pfam WRKY DNA -binding domain 78 135 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0124 287 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 41 260 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
HCH7g0124 287 SMART WRKY_cls 76 136 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0124 287 FunFam WRKY transcription factor 65 63 137 - -
HCH7g0124 287 Gene3D WRKY domain 65 138 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0124 287 MobiDBLite consensus disorder prediction 265 287 - -
HCH7g0124 287 ProSiteProfiles WRKY domain profile. 77 137 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g0124 287 MobiDBLite consensus disorder prediction 153 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0835 HCH-Chr5:6696951 HCH7g0124 HCH-Chr7:825256 9.60E-25 dispersed
HCH6g0445 HCH-Chr6:12418281 HCH7g0124 HCH-Chr7:825256 4.20E-27 dispersed
HCH6g1221 HCH-Chr6:46628616 HCH7g0124 HCH-Chr7:825256 1.30E-23 dispersed
HCH7g0124 HCH-Chr7:825256 HCH7g1655 HCH-Chr7:48631499 1.60E-25 dispersed
HCH14g1002 HCH-Chr14:37326500 HCH7g0124 HCH-Chr7:825256 2.20E-36 wgd
HCH3g0728 HCH-Chr3:5211256 HCH7g0124 HCH-Chr7:825256 1.10E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33818 PF03106 WRKY 9.10E-25 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0124 - - - 0.0