Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH7g0124 | ATGAATCGCCGTATCCGTACAGACCCATTTCTCTCCGAGCAAGATGATCCTGAACCCACGTCAGAAGATGGCTTGCCGGAGCCGGAATCACCCTCCGCCGGAAATGAATCAAAATTCGCCGCCGCATCACCTCTCAAAAAAAGTAGAAGAGGAGTTCAGAAAAGAGTGGTGTCAGTGCCGATCGGTGACGTGGAAGGATCTAAAGGAAAAGGGGAAGCATATCCACCGTCGGATTCATGGGCATGGAGAAAATATGGCCAAAAGCCCATCAAAGGATCTCCATATCCCAGGGGATATTATCGATGTAGTAGCTCCAAGGGCTGCCCGGCCAGAAAGCAAGTAGAAAGAAGCCGTGTGGACCCCACAACGCTCGTTATTACCTACGCTTTCGATCACAACCACCAACTCCCTGCCACCAAATCCCACCACCACTCTCCCGCCGCCGCCATCATCGCATCTCCTCCCAGAAGCACCACCACGTCATCCTCCACGTCATCCGCCGATCAAAACACCACCCCCACGACCACCACATCACTCTCTCCGGCCGAATTTCAACCGGAGGTCATGCTGGAACTCGAACTCGACGGTGAGTCGCCGTTTAAATCATTCATCGGCGATTTCGGGTGGTTGGCTGACGTGGCGTACGACAGAATCATGGAGGGCCCGATTTCCGCGGGAAACGACATGTTCGACGACGCCGACGTAATGGTTTTGTCGAGTAGAGGAGGAGATGACGAGGAAGAGTCTTTATTCGCAGATCTCGAGGAATTACCCGAGGGTTCAGTTATTTTCGGTCGAAGATCGGTCCGACCGCCAGAACCGAACCGGATGTTTAGTAGTAGTAGCAGCGTTTTAAACTACTAG | 864 | 52.89 | MNRRIRTDPFLSEQDDPEPTSEDGLPEPESPSAGNESKFAAASPLKKSRRGVQKRVVSVPIGDVEGSKGKGEAYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTTLVITYAFDHNHQLPATKSHHHSPAAAIIASPPRSTTTSSSTSSADQNTTPTTTTSLSPAEFQPEVMLELELDGESPFKSFIGDFGWLADVAYDRIMEGPISAGNDMFDDADVMVLSSRGGDDEEESLFADLEELPEGSVIFGRRSVRPPEPNRMFSSSSSVLNY | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 825256 | 827125 | + | evm.model.ptg000013l.124 | HCH7g0124 | 547409 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH7g0124 | 287 | MobiDBLite | consensus disorder prediction | 1 | 80 | - | - | |
HCH7g0124 | 287 | SUPERFAMILY | WRKY DNA-binding domain | 73 | 137 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH7g0124 | 287 | Pfam | WRKY DNA -binding domain | 78 | 135 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH7g0124 | 287 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 41 | 260 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER) | |
HCH7g0124 | 287 | SMART | WRKY_cls | 76 | 136 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH7g0124 | 287 | FunFam | WRKY transcription factor 65 | 63 | 137 | - | - | |
HCH7g0124 | 287 | Gene3D | WRKY domain | 65 | 138 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH7g0124 | 287 | MobiDBLite | consensus disorder prediction | 265 | 287 | - | - | |
HCH7g0124 | 287 | ProSiteProfiles | WRKY domain profile. | 77 | 137 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH7g0124 | 287 | MobiDBLite | consensus disorder prediction | 153 | 180 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g0835 | HCH-Chr5:6696951 | HCH7g0124 | HCH-Chr7:825256 | 9.60E-25 | dispersed | |
HCH6g0445 | HCH-Chr6:12418281 | HCH7g0124 | HCH-Chr7:825256 | 4.20E-27 | dispersed | |
HCH6g1221 | HCH-Chr6:46628616 | HCH7g0124 | HCH-Chr7:825256 | 1.30E-23 | dispersed | |
HCH7g0124 | HCH-Chr7:825256 | HCH7g1655 | HCH-Chr7:48631499 | 1.60E-25 | dispersed | |
HCH14g1002 | HCH-Chr14:37326500 | HCH7g0124 | HCH-Chr7:825256 | 2.20E-36 | wgd | |
HCH3g0728 | HCH-Chr3:5211256 | HCH7g0124 | HCH-Chr7:825256 | 1.10E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33818 | PF03106 | WRKY | 9.10E-25 | CL0274 | HCH | TF |
Pathway information
