Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH7g0132 | ATGAGCAGTATTTGCTCTGATCAGCAAAGGTTTCAATCTTTTCTTAAAGACGTCAATACCCCTCCGAGAAAGCTTCTTTCTCGCCGGGAAAACGTCGATATGAGCTCCGATTCGCCGCGTTTCTCACTTTCTCTTGATACCCTTTTGCAGAAGTTCCTTCCTTTCAATAACGCTGGCGACGATGATGTTGACGGTGACGAGGGCGATCCGTACTCTTCCGACCATTTTCGTATGTATGAATTTAAGGTTCGCCGGTGCACTCGTAGCCGGAGCCATGATTGGACGGATTGTCCTTTTGCTCATCCGGGTGAGAAGGCACGCCGCCGTGATCCTCGACGGTTTCATTATTCCGGCACGGTTTGCCCGGAGTTCCGCCGTGGAGGGTGTAATCGTGGAGAAAGCTGTGAATTTTCACATGGAGTTTTTGAATGTTGGCTTCATCCAGCGAGGTATAGAACTGAAGCTTGTAAAGATGGGAAAAATTGTAAGAGAAAAATTTGTTTTTTCGCTCATTCCCCACGTCAGCTTCGTATTATTCCATCTCCGGCGACTCCTTCGCAGGAAAAAACCCATCATCTCCGATCTCCCGCCGGTTCTAACCATTGTTGTATGTTTTGTCATTGTGGAACGACCACCACCAATTCCTCACCAACATCAACACTCTTTAACATGTCTCATTTATCGCCGCCGCTGTCTCCGCCACTATCACCGCAAGGAAATCCCGGATCAGTCAACGGGTTGTCTCCGATATCGGGTAAATTAAACGGAGTTTTGAGTTACAAGGATGCTTTAACTGAGCTTATGACTTCCTTAGAAGCAATGAATATGGAAGCAGCAGCAGCAGCCGCCGCGGCCGTACCACGTCCGACGATGCCATGGATTGATGTTTCTTCTCTCAATACAGAAGATCAATTGCAATTTATTCTTTCACCATCTACTTCAAATTTTTCAAAACCTAAGCCATTTTGTGGTGAGAAAGTTCCATCAAATTACAAAATTGCCATTGATGGAAATTATAAAGCTAAGAATTCTGAGAGTGATCGGGATTGTTCCTCTGATCCTGATATTGGATGGGTTAACGAGCTTCTGATGTAG | 1095 | 45.66 | MSSICSDQQRFQSFLKDVNTPPRKLLSRRENVDMSSDSPRFSLSLDTLLQKFLPFNNAGDDDVDGDEGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEFRRGGCNRGESCEFSHGVFECWLHPARYRTEACKDGKNCKRKICFFAHSPRQLRIIPSPATPSQEKTHHLRSPAGSNHCCMFCHCGTTTTNSSPTSTLFNMSHLSPPLSPPLSPQGNPGSVNGLSPISGKLNGVLSYKDALTELMTSLEAMNMEAAAAAAAAVPRPTMPWIDVSSLNTEDQLQFILSPSTSNFSKPKPFCGEKVPSNYKIAIDGNYKAKNSESDRDCSSDPDIGWVNELLM | 364 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 893918 | 895012 | - | evm.model.ptg000013l.132 | HCH7g0132 | 547417 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH7g0132 | 364 | ProSiteProfiles | Zinc finger C3H1-type profile. | 116 | 142 | IPR000571 | GO:0046872(InterPro) | |
HCH7g0132 | 364 | FunFam | Zinc finger CCCH domain-containing protein 66 | 73 | 141 | - | - | |
HCH7g0132 | 364 | PANTHER | UNKEMPT FAMILY MEMBER | 35 | 318 | IPR045234 | - | |
HCH7g0132 | 364 | Gene3D | - | 115 | 179 | - | - | |
HCH7g0132 | 364 | SMART | c3hfinal6 | 150 | 173 | IPR000571 | GO:0046872(InterPro) | |
HCH7g0132 | 364 | SMART | c3hfinal6 | 115 | 141 | IPR000571 | GO:0046872(InterPro) | |
HCH7g0132 | 364 | Pfam | CCCH-type zinc finger | 120 | 139 | IPR041367 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g1035 | HCH-Chr11:41892392 | HCH7g0132 | HCH-Chr7:893918 | 8.90E-46 | dispersed | |
HCH4g0558 | HCH-Chr4:3609386 | HCH7g0132 | HCH-Chr7:893918 | 2.20E-48 | dispersed | |
HCH7g0132 | HCH-Chr7:893918 | HCH8g0682 | HCH-Chr8:43524013 | 4.30E-60 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33820 | PF18044 | zf-CCCH_4 | 8.50E-06 | CL0537 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH7g0132 | K23047 | - | csv:101211149 | 442.965 |