Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0132 ATGAGCAGTATTTGCTCTGATCAGCAAAGGTTTCAATCTTTTCTTAAAGACGTCAATACCCCTCCGAGAAAGCTTCTTTCTCGCCGGGAAAACGTCGATATGAGCTCCGATTCGCCGCGTTTCTCACTTTCTCTTGATACCCTTTTGCAGAAGTTCCTTCCTTTCAATAACGCTGGCGACGATGATGTTGACGGTGACGAGGGCGATCCGTACTCTTCCGACCATTTTCGTATGTATGAATTTAAGGTTCGCCGGTGCACTCGTAGCCGGAGCCATGATTGGACGGATTGTCCTTTTGCTCATCCGGGTGAGAAGGCACGCCGCCGTGATCCTCGACGGTTTCATTATTCCGGCACGGTTTGCCCGGAGTTCCGCCGTGGAGGGTGTAATCGTGGAGAAAGCTGTGAATTTTCACATGGAGTTTTTGAATGTTGGCTTCATCCAGCGAGGTATAGAACTGAAGCTTGTAAAGATGGGAAAAATTGTAAGAGAAAAATTTGTTTTTTCGCTCATTCCCCACGTCAGCTTCGTATTATTCCATCTCCGGCGACTCCTTCGCAGGAAAAAACCCATCATCTCCGATCTCCCGCCGGTTCTAACCATTGTTGTATGTTTTGTCATTGTGGAACGACCACCACCAATTCCTCACCAACATCAACACTCTTTAACATGTCTCATTTATCGCCGCCGCTGTCTCCGCCACTATCACCGCAAGGAAATCCCGGATCAGTCAACGGGTTGTCTCCGATATCGGGTAAATTAAACGGAGTTTTGAGTTACAAGGATGCTTTAACTGAGCTTATGACTTCCTTAGAAGCAATGAATATGGAAGCAGCAGCAGCAGCCGCCGCGGCCGTACCACGTCCGACGATGCCATGGATTGATGTTTCTTCTCTCAATACAGAAGATCAATTGCAATTTATTCTTTCACCATCTACTTCAAATTTTTCAAAACCTAAGCCATTTTGTGGTGAGAAAGTTCCATCAAATTACAAAATTGCCATTGATGGAAATTATAAAGCTAAGAATTCTGAGAGTGATCGGGATTGTTCCTCTGATCCTGATATTGGATGGGTTAACGAGCTTCTGATGTAG 1095 45.66 MSSICSDQQRFQSFLKDVNTPPRKLLSRRENVDMSSDSPRFSLSLDTLLQKFLPFNNAGDDDVDGDEGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEFRRGGCNRGESCEFSHGVFECWLHPARYRTEACKDGKNCKRKICFFAHSPRQLRIIPSPATPSQEKTHHLRSPAGSNHCCMFCHCGTTTTNSSPTSTLFNMSHLSPPLSPPLSPQGNPGSVNGLSPISGKLNGVLSYKDALTELMTSLEAMNMEAAAAAAAAVPRPTMPWIDVSSLNTEDQLQFILSPSTSNFSKPKPFCGEKVPSNYKIAIDGNYKAKNSESDRDCSSDPDIGWVNELLM 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 893918 895012 - evm.model.ptg000013l.132 HCH7g0132 547417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0132 364 ProSiteProfiles Zinc finger C3H1-type profile. 116 142 IPR000571 GO:0046872(InterPro)
HCH7g0132 364 FunFam Zinc finger CCCH domain-containing protein 66 73 141 - -
HCH7g0132 364 PANTHER UNKEMPT FAMILY MEMBER 35 318 IPR045234 -
HCH7g0132 364 Gene3D - 115 179 - -
HCH7g0132 364 SMART c3hfinal6 150 173 IPR000571 GO:0046872(InterPro)
HCH7g0132 364 SMART c3hfinal6 115 141 IPR000571 GO:0046872(InterPro)
HCH7g0132 364 Pfam CCCH-type zinc finger 120 139 IPR041367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1035 HCH-Chr11:41892392 HCH7g0132 HCH-Chr7:893918 8.90E-46 dispersed
HCH4g0558 HCH-Chr4:3609386 HCH7g0132 HCH-Chr7:893918 2.20E-48 dispersed
HCH7g0132 HCH-Chr7:893918 HCH8g0682 HCH-Chr8:43524013 4.30E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33820 PF18044 zf-CCCH_4 8.50E-06 CL0537 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0132 K23047 - csv:101211149 442.965