Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0133 ATGACTACTGGAAGAGAAATCCTCCACAAAATGAAGGTGAAGGCAGGGTTTGGTTCATCAGCACAAGATACAGGGAAAGGTAAAAGCAAAGCATCAAAGAGTAGTATTACTCATGGAAGCCATTTGGTGAAGGGGAAATCCAATCATGCCATGGAAGATTACTTAGTTTCTGTTTTCAAGCAAGTGAAAGAACATGAATTAGGTTTGTTTGCAATTTTTGATGGCCATTTAGGCCATGATGTTGCGAATTATTTGCAAAACAACTTGTTTGATAATATTCTCAAAGAGCCTGATTTCTGGATGGAAACTGAGAAAGCAATAAAGAGAGCATACAAGAAAACAGATGATGAAATACTGGATAAAGTCTCACAACTGGGAAAAGGAGGATCGACCGCGGTGACTGCGATTCTTATCGACGGCGAGAAGCTTGTCGTTGGGAATGTCGGAGATTCTCGAGCTGTTTTATGTAAAAATGGCGTCGCCGAACAATTATCAGTGGATCATGAACCCAGCAAAGAAAAGAGGGAAATTGAAAGCCGTGGTGGTTTTGTATCAAATCTTCCAGGAGACGTTCCACGTGTCGATGGACAATTGGCTGTAGCGAGAGCATTTGGAGATAGAAGTTTGAAAATTCACCTCAGCTCAGAACCTGATGTTGAAGTAAAAACAGTGGATGAGAATACAGAATTCATGATTTTGGCCAGTGATGGCATATGGAAGGTGATGAGTAACCAAGAAGCAGTAGATTGTATCAGACACATAAAAGATGCACAGTCAGCAGCGAAACAATTGATCGAGGAAGCAGTAACAAGGAGAAGTAAGGATGACATATCATGCATTGTGGTTAGGTTTCATTGA 858 40.79 MTTGREILHKMKVKAGFGSSAQDTGKGKSKASKSSITHGSHLVKGKSNHAMEDYLVSVFKQVKEHELGLFAIFDGHLGHDVANYLQNNLFDNILKEPDFWMETEKAIKRAYKKTDDEILDKVSQLGKGGSTAVTAILIDGEKLVVGNVGDSRAVLCKNGVAEQLSVDHEPSKEKREIESRGGFVSNLPGDVPRVDGQLAVARAFGDRSLKIHLSSEPDVEVKTVDENTEFMILASDGIWKVMSNQEAVDCIRHIKDAQSAAKQLIEEAVTRRSKDDISCIVVRFH 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 899353 901487 - evm.model.ptg000013l.133 HCH7g0133 547418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0133 285 Pfam Protein phosphatase 2C 48 277 IPR001932 -
HCH7g0133 285 Gene3D - 15 285 IPR036457 -
HCH7g0133 285 ProSiteProfiles PPM-type phosphatase domain profile. 37 284 IPR001932 -
HCH7g0133 285 SUPERFAMILY PP2C-like 30 285 IPR036457 -
HCH7g0133 285 MobiDBLite consensus disorder prediction 18 42 - -
HCH7g0133 285 PANTHER PROTEIN PHOSPHATASE 34 282 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH7g0133 285 CDD PP2Cc 38 284 IPR001932 -
HCH7g0133 285 SMART PP2C_4 27 282 IPR001932 -
HCH7g0133 285 MobiDBLite consensus disorder prediction 22 42 - -
HCH7g0133 285 FunFam Probable protein phosphatase 2C 39 27 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0185 HCH-Chr13:1245736 HCH7g0133 HCH-Chr7:899353 3.70E-48 dispersed
HCH1g0356 HCH-Chr1:50431583 HCH7g0133 HCH-Chr7:899353 3.00E-37 dispersed
HCH7g0133 HCH-Chr7:899353 HCH8g0706 HCH-Chr8:43775944 2.00E-28 dispersed
HCH11g0986 HCH-Chr11:41408307 HCH7g0133 HCH-Chr7:899353 6.00E-86 transposed
HCH12g0261 HCH-Chr12:1447153 HCH7g0133 HCH-Chr7:899353 2.30E-90 transposed
HCH12g0442 HCH-Chr12:2557650 HCH7g0133 HCH-Chr7:899353 1.00E-51 transposed
HCH6g1489 HCH-Chr6:48477764 HCH7g0133 HCH-Chr7:899353 2.80E-32 transposed
HCH6g1774 HCH-Chr6:50127475 HCH7g0133 HCH-Chr7:899353 1.40E-32 transposed
HCH12g1058 HCH-Chr12:7936003 HCH7g0133 HCH-Chr7:899353 7.40E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0133 K17506 - csv:101211399 458.759