Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0138 ATGATAATGGCTGCACCATTCTCATTGTGTGCCTTAATCTTCTTTCTCCTCCTCCAGTTTTCTACTTTCAACACTGGCATCTCTGCCGCCCATCACCGCCACAACAACCACCATGTCCATGCACCGCCTGCGGTGGCGTCAAACCCAAGACTCCATCAAGCTTTTCTTGCTCTCCAAGCATGGAAATTAGTCATTTACTCTGACCCAAAAAACCACACTAGCAACTGGATAGGACCTTCAGTTTGCAGCTATTTTGGTGTATACTGTGCTCCTGCCATCGACGACCCAAAAGTTCAGGTCGTTGCCGGCATTGACTTGAACCACGGCGACATAGCTGGATTCCTTCCAAATGAACTAGGCCTTCTCACTGACCTTTCTCTTCTCCATCTCAATAGCAATCGTTTCTGCGGCATTCTGCCACTGACTTTATCCAACCTCACTCTTCTCTTTGAGCTTGATCTAAGTAACAACAGATTCGTTGGCCCTTTTCCGGATGTCGTCCTCCGTCTTCCTAATCTAAACTATCTTGACCTTCGTTTTAATGAGTTTGAAGGACCCCTCCCTCCTGATCTCTTCAACAAAAATCTTGATGCCATTTTCATTAACAGTAACCGTTTCACCAGTATTATTCCTCGGAACATAGGTGGTCGGTCGGCCTCCGTAATCGTGTTTGCAAATAACAATTTCGGCGGTTGTCTTCCACCAACCATAGCTAGCTTTGCAAACAGTTTGGAAGAACTTCTATTAATCAACACTACTTTATCAGGGTGTTTGCCTCAGGAGATTGGTTTTCTCTACAAATTGAGAGTTTTGGATGTGAGTTTTAATAAGTTAGTTGGTCCACTGCCTTATAGTTTAGCAGGGTTGGCTCATTTAGAGCAACTGAATTTGGCACAGAATTTGCTGTCGGGGAATGTTTATGAAGGTCTTTGTGACCTTCCTAACTTGGCAAATTTCACGTTTTCTGACAACTACTTCTGTGAGGAACAAGGAACATGTCGTAATCTGACATCGAAAAGCGTAGCCTTCGACGATCGTCGAAACTGTTTGCCTGATAAGCCATCGCAGAGGAGCAAGAAGGAATGTGCAGCTGTGCTTGAGCATCCTGTCGACTGCTTCGAGCACCCGTGCGGGGGTGCTGTTGCCTCCATTCCAGCTTCGATTCCCATTTCTTCACCTTCTTCTGCTGCTGCTGCTTCCCCTCCTACTCCTACCCACACTTGA 1224 46.0 MIMAAPFSLCALIFFLLLQFSTFNTGISAAHHRHNNHHVHAPPAVASNPRLHQAFLALQAWKLVIYSDPKNHTSNWIGPSVCSYFGVYCAPAIDDPKVQVVAGIDLNHGDIAGFLPNELGLLTDLSLLHLNSNRFCGILPLTLSNLTLLFELDLSNNRFVGPFPDVVLRLPNLNYLDLRFNEFEGPLPPDLFNKNLDAIFINSNRFTSIIPRNIGGRSASVIVFANNNFGGCLPPTIASFANSLEELLLINTTLSGCLPQEIGFLYKLRVLDVSFNKLVGPLPYSLAGLAHLEQLNLAQNLLSGNVYEGLCDLPNLANFTFSDNYFCEEQGTCRNLTSKSVAFDDRRNCLPDKPSQRSKKECAAVLEHPVDCFEHPCGGAVASIPASIPISSPSSAAAASPPTPTHT 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 929134 930357 + evm.model.ptg000013l.138 HCH7g0138 547423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0138 407 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 391 IPR051582 -
HCH7g0138 407 Pfam Leucine Rich Repeat 267 289 IPR001611 GO:0005515(InterPro)
HCH7g0138 407 Pfam Leucine Rich Repeat 149 166 IPR001611 GO:0005515(InterPro)
HCH7g0138 407 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515(InterPro)
HCH7g0138 407 Gene3D Ribonuclease Inhibitor 52 217 IPR032675 -
HCH7g0138 407 FunFam Leucine-rich repeat extensin-like protein 1 55 216 - -
HCH7g0138 407 Gene3D Ribonuclease Inhibitor 218 353 IPR032675 -
HCH7g0138 407 SUPERFAMILY L domain-like 67 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1116 HCH-Chr13:36805619 HCH7g0138 HCH-Chr7:929134 5.20E-33 dispersed
HCH7g0138 HCH-Chr7:929134 HCH7g1246 HCH-Chr7:45311020 2.50E-40 dispersed
HCH7g0138 HCH-Chr7:929134 HCH12g0330 HCH-Chr12:1904102 2.40E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0138 - - - 0.0