Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0149 ATGGAAGAATCTCTTATTAGTGGAGCAAGTAGCAGTAGCAGCAGTAGCTCAAGCAGTAGAAACAGAGACCATCATTTGAAATTCAATCACCGTTCTGATGCCATCGCTTATGGCTCTGCCTTTCAAAAAGCTGCTGCTTTGGTGGATCTGGCTGAGGATGGCATTGGTATACCTGAGCAAATCCTTGATCAGTCAAGCTTTCAGAGTGCTGCAAAGCTCTACTTCATTTTCATTAAATTTGATTTTATTTGGTCCTTAAATTACTTTGCACTGATAATCCTAAATTTCTTTGAGAAACCCTTATGGTGCTCCAAATACAATACACATTCTTGTAATGAAAGGGAGTACTTCTTTCTTGGGCAATTGCCATACTTAACAGGTGCAGAATCTCTTATTTATGAGGTCATAACGATCGTAGTACTTGTGGTACATACCTTTTTTCCAATTTCATATGAAGGTTTCCGGCTTTACTGGAAAAATCCCTTGAACCAGTTGAAGGTCATTTTCACAATAATCTTGGTTGCTGATTTACTCGTTTATACTCTTTATTTGTCGCCTGTGGCTTTTGATTATCTTCCAGTCAGAGTTGCACCATATATTAGAGTTGTCTTTTTCATCATAAATATCAGGCATCTACGGGAGAGCATCATCATCCTGGCCGGAATGCTTGGAACATACTTGAATGTCATGGCTCTATGGCTGTTGTTCCTTCTATTTTCCAGCTGGTTAGCATATGTCATCTTTGAGGATACACAGCAAGGGAAAGTGGTTTTTACTTCTTTCGGAACTACGTTATATCAAATGTTTATTTTGTTCACCACATCCAACAGTCCAGATGTTTGGATACAAGCCTACAAGGTATCACGTTGGCATTGTCTGTTTTTTGTTCTTTATGTGCTGTTGGGAGTCTACTTTGTTACAAACTTGATTCTCGCTGTTGTATACGACAGCTTCAAAAGTCAGCTCGCTAAACAAGTTTCTGAGATGGACCTCTTGAGGAAAAGGACATTGGACAAAGCATTTAGTCTTATGGATAAAAATAATGTTGGATTCATTGATAAAGAGCATTGCCTTAGACTCCTTGAAGAACTTAACAGATACAGGACTTTGCCAAAAATATCAAGGGATGATTATGAGTTAATATTTGATGAGCTGGATGACAGCCATGATTTTAAGATTAATAAGGATGAATTTGCTGACCTTTGCAATGCTATAGCTTTGAAGTTCCAGAAGGAGGATATTCCTTCATGGTTTGAAAAGTTTCCCTCATTCTACCGTTCGTCTATATCTGAAAAGCTGAAAGCTTTTGTGCGGAGCCTCACATTTGGATATGTTATATCCTTTATTCTCATACTGAACCTGGTTGCTGTTATTATTGAAACAACGCTTGATATAGAAAACAATAATGCTCAGAAGGCATGGCAAGAGCTGGAGTTTGTATTTGGTTGGATATATGTGGTTGAAATGGCTCTAAAAATCTATTCATTTGGATTTTGGAATTATTGGAGAGATGGTCAAAACCAGTTTGATTTTCTTATCACGTGGATTATAGTTATCGGAGAAACTATGACTTTTGTATCACCTCGTGGACTAACTTTCCTTTCAAATGGAGAATGGATTCGCTACCTTCTCATTGCAAGAATGTTACGCTTGATAAGGCTTCTGATGCACGTCCAGAGTTATCGAGCATTTCTTGCTACATTCTTAACTCTCATTCCAAGTTTGATGCCGTATTTAGGAACCATTTTCTGTGTCCTTTGTCTTTATTGCACGCTTGGTGTGCAGATCTTTGGAGGGCTTATTAATGTTGGAAATCCCACTTTGTATAAGACGGATCTGGCTGATAATGACTACCTACTTTTCAATTTCAATGACTATCCAAATGGGATGGTAACACTTTTCAATTTGCTAGTGATGGGAAATTGGCAACTCTGGATGCAGAGCTACAAGGAATTAACAGGAAGCAATTGGACCCTCATATATTTTATCAGTTTCTACCTAATAACTGTTTTGCTGCTTTTGAATTTGGTTGTAGCTTTTGTCTTGGAGGCATTCTTTGCTGAATTGGATATTGAATCTGCAGAAAAGAATGGACAGGATGAGGAAGGAGAAAATAGAAAGGATCGTCGACGTTTCGTTGGCACCAAAACTCGGAGTCAGAGAGTTGACATTCTTCTTCATCATATGTTGAGTGCCGAATTAGATCGAAAGGATTCATAA 2220 38.2 MEESLISGASSSSSSSSSSRNRDHHLKFNHRSDAIAYGSAFQKAAALVDLAEDGIGIPEQILDQSSFQSAAKLYFIFIKFDFIWSLNYFALIILNFFEKPLWCSKYNTHSCNEREYFFLGQLPYLTGAESLIYEVITIVVLVVHTFFPISYEGFRLYWKNPLNQLKVIFTIILVADLLVYTLYLSPVAFDYLPVRVAPYIRVVFFIINIRHLRESIIILAGMLGTYLNVMALWLLFLLFSSWLAYVIFEDTQQGKVVFTSFGTTLYQMFILFTTSNSPDVWIQAYKVSRWHCLFFVLYVLLGVYFVTNLILAVVYDSFKSQLAKQVSEMDLLRKRTLDKAFSLMDKNNVGFIDKEHCLRLLEELNRYRTLPKISRDDYELIFDELDDSHDFKINKDEFADLCNAIALKFQKEDIPSWFEKFPSFYRSSISEKLKAFVRSLTFGYVISFILILNLVAVIIETTLDIENNNAQKAWQELEFVFGWIYVVEMALKIYSFGFWNYWRDGQNQFDFLITWIIVIGETMTFVSPRGLTFLSNGEWIRYLLIARMLRLIRLLMHVQSYRAFLATFLTLIPSLMPYLGTIFCVLCLYCTLGVQIFGGLINVGNPTLYKTDLADNDYLLFNFNDYPNGMVTLFNLLVMGNWQLWMQSYKELTGSNWTLIYFISFYLITVLLLLNLVVAFVLEAFFAELDIESAEKNGQDEEGENRKDRRRFVGTKTRSQRVDILLHHMLSAELDRKDS 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1002255 1013875 - evm.model.ptg000013l.149 HCH7g0149 547434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0149 739 Gene3D - 211 323 - -
HCH7g0149 739 MobiDBLite consensus disorder prediction 1 23 - -
HCH7g0149 739 Gene3D - 328 405 - -
HCH7g0149 739 SUPERFAMILY EF-hand 328 404 IPR011992 -
HCH7g0149 739 Gene3D - 565 724 - -
HCH7g0149 739 FunFam Two pore calcium channel protein 1 432 564 - -
HCH7g0149 739 Gene3D - 431 564 IPR027359 -
HCH7g0149 739 FunFam Two pore calcium channel protein 1 565 721 - -
HCH7g0149 739 FunFam Two pore calcium channel protein 1 211 322 - -
HCH7g0149 739 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 1 738 IPR044581 GO:0000325(PANTHER)|GO:0005245(InterPro)|GO:0005245(PANTHER)|GO:0005774(PANTHER)|GO:0006816(PANTHER)
HCH7g0149 739 CDD EFh 337 401 IPR002048 GO:0005509(InterPro)
HCH7g0149 739 ProSiteProfiles EF-hand calcium-binding domain profile. 373 408 IPR002048 GO:0005509(InterPro)
HCH7g0149 739 MobiDBLite consensus disorder prediction 1 19 - -
HCH7g0149 739 SUPERFAMILY Voltage-gated potassium channels 440 685 - -
HCH7g0149 739 ProSiteProfiles EF-hand calcium-binding domain profile. 332 367 IPR002048 GO:0005509(InterPro)
HCH7g0149 739 SMART efh_1 336 364 IPR002048 GO:0005509(InterPro)
HCH7g0149 739 SMART efh_1 377 405 IPR002048 GO:0005509(InterPro)
HCH7g0149 739 Pfam Ion transport protein 441 685 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g0149 739 Pfam Ion transport protein 131 322 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0149 K16900 - csv:101206980 1190.64