Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0158 ATGCCGCTCCGCCGAGCCCACGGTTGTCCGTCATTGCTCGGGTTCTGGGCGGTGACGTTTGCGATGGTATCGATGGCCGGAGATCATATTGTGGTCGAGTCAGTCCAAGTAAAAAATCGCACGGTAGCTCTACATTGGTTACCCGCCACCGCCACCTGGTACGGTAGTCCCGAAGGTGACGGTAGCGATGGTGGGGCGTGTGGATACGGGAGTTTGGTGGATGTGAAGCCATGGAAAGCGAGAGTGGGGGCCGTGAGTCCGGTACTATTCAAGAACGGCGAAGGGTGTGGAGCTTGCTACAAAGTTAAGTGCTTGGACCGATCCATATGTGCTAAACGAGCAGTGACTATAATAGTAACGGATGAGTGCCCCGGCGGCTATTGTGCCAATGGCCGCACCCACTTCGATTTGAGTGGCGCGGCATTTGGTAGAATGGCGGTGGCCGGGGCAGGCGCACGGCTACGCAACCGCGGTGAACTCTCAGTCATCTACAGCCGGACTCCTTGCACATATCCAGGAAAGAACATAGCATTTCGTGTGAATGAAGGTTCTACGGATCATTGGCTTTCACTTTTGGTGGAATTTGAGGATGGAGATGGAGATATTGGCTCAATGCATATTAAACAAGCTAACTCAAATGTGTGGGAGGAAATGACACATGTGTGGGGTGCAACTTGGTGCATGAATGGAGGACCTCTAAAGGGCCCATTTTCAGTCAAATTAACCACATTATCAACTCTCAAGACTCTCTCAGCCAGAGATGTTATTCCAAGAAATTGGTCTCCAAAAGCTACTTATACATCTCGTTTGAATTTCTCTTAG 822 50.85 MPLRRAHGCPSLLGFWAVTFAMVSMAGDHIVVESVQVKNRTVALHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPWKARVGAVSPVLFKNGEGCGACYKVKCLDRSICAKRAVTIIVTDECPGGYCANGRTHFDLSGAAFGRMAVAGAGARLRNRGELSVIYSRTPCTYPGKNIAFRVNEGSTDHWLSLLVEFEDGDGDIGSMHIKQANSNVWEEMTHVWGATWCMNGGPLKGPFSVKLTTLSTLKTLSARDVIPRNWSPKATYTSRLNFS 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1059523 1061314 + evm.model.ptg000013l.158 HCH7g0158 547443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0158 273 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576(InterPro)
HCH7g0158 273 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576(InterPro)
HCH7g0158 273 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576(InterPro)
HCH7g0158 273 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576(InterPro)
HCH7g0158 273 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576(InterPro)
HCH7g0158 273 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576(InterPro)
HCH7g0158 273 SUPERFAMILY PHL pollen allergen 174 268 IPR036749 -
HCH7g0158 273 PRINTS Major pollen allergen Lol pI signature 84 95 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g0158 273 PRINTS Major pollen allergen Lol pI signature 178 193 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g0158 273 PRINTS Major pollen allergen Lol pI signature 124 139 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g0158 273 PRINTS Major pollen allergen Lol pI signature 244 261 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g0158 273 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g0158 273 PRINTS Major pollen allergen Lol pI signature 194 209 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g0158 273 SUPERFAMILY Barwin-like endoglucanases 44 173 IPR036908 -
HCH7g0158 273 Gene3D - 30 170 IPR036908 -
HCH7g0158 273 PANTHER EXPANSIN-B3 34 272 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
HCH7g0158 273 Gene3D - 171 273 IPR036749 -
HCH7g0158 273 CDD DPBB_EXPB_N 46 169 - -
HCH7g0158 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 174 IPR007112 -
HCH7g0158 273 Pfam Lytic transglycolase 84 151 IPR009009 -
HCH7g0158 273 Pfam Expansin C-terminal domain 176 257 IPR007117 -
HCH7g0158 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 268 IPR007117 -
HCH7g0158 273 FunFam Expansin B3 32 170 - -
HCH7g0158 273 FunFam Beta-expansin 3 171 273 - -
HCH7g0158 273 SMART dpbb_1 82 164 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0158 HCH-Chr7:1059523 HCH7g1774 HCH-Chr7:49319079 9.70E-65 dispersed
HCH5g0307 HCH-Chr5:1907084 HCH7g0158 HCH-Chr7:1059523 1.40E-25 transposed
HCH2g0817 HCH-Chr2:51732707 HCH7g0158 HCH-Chr7:1059523 2.10E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0158 K20628 - csv:101205324 433.335