Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0159 ATGGCGGAGGATAAGAAGAGTGGAAAATCCAAGATGACTATTGATGGAAAAAACCAACTGGAATTCGAAAGAAAAACCGATAAGGGGAAGGATGTCCGGATTAGCTCCGAGAGGCGGCAATGGAAGCCAGTTTTTGATGATGCTTTCTTGTCTACCAGACCTCTCATGAAGGATCATTCCTCTGTTTCTTCTTATTCCCCTGCTTCCCTTCCTTCCCCTGTTTCTTCTTACTGCTCTGCTTCGCTTCCTTCCCCTGTTTCTTCCTCTCCACTTTCTTCAAAAATTACATTTCCTTTTGATTTAGAATCATCCCAGCAATATCCTACACCGGTGCAGTCACTCAATAATCAGCAGCAACAGATGATTTCTTTTGGTTCTTCACACCAACACCATGGTTTTCCGCCATACTTCGTCGGAGATGCGGCTGCGGCAGTGTCGATGCAGCAGCAACAGCAACTTTTCAAGTACTGGAGTGACACTTTCCATCTTAGTCCAAGAGGGAGAGCACTGATGATGATGAAGAACAGATTGAACCCAGATGGGAGTCCGTATTTTAGACCGCCATTGCAGCCCATAAGTGCCACCAAGCTCTACAGAGGAGTGAGGCAGCGGCATTGGGGAAAATGGGTGGCTGAAATTCGTCTTCCTCGCAACAGGACTCGCCTTTGGCTTGGCACGTTTGACACTGCAGAAGACGCCGCTATGGCATATGATCGCGAGGCCTTCAAATTGAGAGGCGAAAATGCCAGGCTCAATTTCCCTGAACGCTTCCTCAATCAGAACAAAACAGAGTCCCCTGAAGAAGCTCATGATCCAGAGAGTCTTGTTCTGCCACTACCACTGGTGGCTGTGCAGCAGCCTCCCCCAGATGATGACTCGTTATTGACATCGAGCGAGGCTACGGTGAGTACCGATGAAACGCAGGCGAGTGCGGAGGCAGTAAAGCCACCACCAGAAGAAGTGATTTGGGGAGAAATGGAAGAGGCTTGGTTCAATGCGATACCGGCCGGATGGGGTCCCGGCAGCCCGGTGTGGGATGATTTAGACACAACCAACAATTTACTTTTGAAATCTTATGATCTCCCTTTCGTTAATGCAAATAATCAGCAACAATTCAATGATTCTGACATGTTCCAAAGCAAGCAGCAGCAAGAGAACTCAGAGTCAGCTTCTTCTTCTTCATGTTCTGGTCCCATGAAGCTCTCCTTATGGAAAGATCAAGATTAA 1227 47.68 MAEDKKSGKSKMTIDGKNQLEFERKTDKGKDVRISSERRQWKPVFDDAFLSTRPLMKDHSSVSSYSPASLPSPVSSYCSASLPSPVSSSPLSSKITFPFDLESSQQYPTPVQSLNNQQQQMISFGSSHQHHGFPPYFVGDAAAAVSMQQQQQLFKYWSDTFHLSPRGRALMMMKNRLNPDGSPYFRPPLQPISATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPERFLNQNKTESPEEAHDPESLVLPLPLVAVQQPPPDDDSLLTSSEATVSTDETQASAEAVKPPPEEVIWGEMEEAWFNAIPAGWGPGSPVWDDLDTTNNLLLKSYDLPFVNANNQQQFNDSDMFQSKQQQENSESASSSSCSGPMKLSLWKDQD 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1069008 1070234 - evm.model.ptg000013l.159 HCH7g0159 547444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0159 408 SMART rav1_2 197 260 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0159 408 MobiDBLite consensus disorder prediction 290 310 - -
HCH7g0159 408 MobiDBLite consensus disorder prediction 371 408 - -
HCH7g0159 408 MobiDBLite consensus disorder prediction 1 35 - -
HCH7g0159 408 CDD AP2 196 255 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0159 408 MobiDBLite consensus disorder prediction 371 400 - -
HCH7g0159 408 SUPERFAMILY DNA-binding domain 197 255 IPR016177 GO:0003677(InterPro)
HCH7g0159 408 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 34 341 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
HCH7g0159 408 Pfam AP2 domain 197 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0159 408 FunFam Ethylene-responsive transcription factor 2 196 255 - -
HCH7g0159 408 MobiDBLite consensus disorder prediction 286 315 - -
HCH7g0159 408 ProSiteProfiles AP2/ERF domain profile. 197 254 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0159 408 PRINTS Ethylene responsive element binding protein signature 220 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0159 408 PRINTS Ethylene responsive element binding protein signature 198 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g0159 408 Gene3D AP2/ERF domain 197 256 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1416 HCH-Chr6:47977714 HCH7g0159 HCH-Chr7:1069008 2.00E-24 dispersed
HCH7g0159 HCH-Chr7:1069008 HCH7g1792 HCH-Chr7:49504042 7.80E-18 dispersed
HCH2g0811 HCH-Chr2:51706687 HCH7g0159 HCH-Chr7:1069008 1.10E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33823 PF00847 AP2 2.60E-13 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0159 - - - 0.0