Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH7g0159 | ATGGCGGAGGATAAGAAGAGTGGAAAATCCAAGATGACTATTGATGGAAAAAACCAACTGGAATTCGAAAGAAAAACCGATAAGGGGAAGGATGTCCGGATTAGCTCCGAGAGGCGGCAATGGAAGCCAGTTTTTGATGATGCTTTCTTGTCTACCAGACCTCTCATGAAGGATCATTCCTCTGTTTCTTCTTATTCCCCTGCTTCCCTTCCTTCCCCTGTTTCTTCTTACTGCTCTGCTTCGCTTCCTTCCCCTGTTTCTTCCTCTCCACTTTCTTCAAAAATTACATTTCCTTTTGATTTAGAATCATCCCAGCAATATCCTACACCGGTGCAGTCACTCAATAATCAGCAGCAACAGATGATTTCTTTTGGTTCTTCACACCAACACCATGGTTTTCCGCCATACTTCGTCGGAGATGCGGCTGCGGCAGTGTCGATGCAGCAGCAACAGCAACTTTTCAAGTACTGGAGTGACACTTTCCATCTTAGTCCAAGAGGGAGAGCACTGATGATGATGAAGAACAGATTGAACCCAGATGGGAGTCCGTATTTTAGACCGCCATTGCAGCCCATAAGTGCCACCAAGCTCTACAGAGGAGTGAGGCAGCGGCATTGGGGAAAATGGGTGGCTGAAATTCGTCTTCCTCGCAACAGGACTCGCCTTTGGCTTGGCACGTTTGACACTGCAGAAGACGCCGCTATGGCATATGATCGCGAGGCCTTCAAATTGAGAGGCGAAAATGCCAGGCTCAATTTCCCTGAACGCTTCCTCAATCAGAACAAAACAGAGTCCCCTGAAGAAGCTCATGATCCAGAGAGTCTTGTTCTGCCACTACCACTGGTGGCTGTGCAGCAGCCTCCCCCAGATGATGACTCGTTATTGACATCGAGCGAGGCTACGGTGAGTACCGATGAAACGCAGGCGAGTGCGGAGGCAGTAAAGCCACCACCAGAAGAAGTGATTTGGGGAGAAATGGAAGAGGCTTGGTTCAATGCGATACCGGCCGGATGGGGTCCCGGCAGCCCGGTGTGGGATGATTTAGACACAACCAACAATTTACTTTTGAAATCTTATGATCTCCCTTTCGTTAATGCAAATAATCAGCAACAATTCAATGATTCTGACATGTTCCAAAGCAAGCAGCAGCAAGAGAACTCAGAGTCAGCTTCTTCTTCTTCATGTTCTGGTCCCATGAAGCTCTCCTTATGGAAAGATCAAGATTAA | 1227 | 47.68 | MAEDKKSGKSKMTIDGKNQLEFERKTDKGKDVRISSERRQWKPVFDDAFLSTRPLMKDHSSVSSYSPASLPSPVSSYCSASLPSPVSSSPLSSKITFPFDLESSQQYPTPVQSLNNQQQQMISFGSSHQHHGFPPYFVGDAAAAVSMQQQQQLFKYWSDTFHLSPRGRALMMMKNRLNPDGSPYFRPPLQPISATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPERFLNQNKTESPEEAHDPESLVLPLPLVAVQQPPPDDDSLLTSSEATVSTDETQASAEAVKPPPEEVIWGEMEEAWFNAIPAGWGPGSPVWDDLDTTNNLLLKSYDLPFVNANNQQQFNDSDMFQSKQQQENSESASSSSCSGPMKLSLWKDQD | 408 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1069008 | 1070234 | - | evm.model.ptg000013l.159 | HCH7g0159 | 547444 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH7g0159 | 408 | SMART | rav1_2 | 197 | 260 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH7g0159 | 408 | MobiDBLite | consensus disorder prediction | 290 | 310 | - | - | |
HCH7g0159 | 408 | MobiDBLite | consensus disorder prediction | 371 | 408 | - | - | |
HCH7g0159 | 408 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
HCH7g0159 | 408 | CDD | AP2 | 196 | 255 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH7g0159 | 408 | MobiDBLite | consensus disorder prediction | 371 | 400 | - | - | |
HCH7g0159 | 408 | SUPERFAMILY | DNA-binding domain | 197 | 255 | IPR016177 | GO:0003677(InterPro) | |
HCH7g0159 | 408 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 34 | 341 | IPR051758 | GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
HCH7g0159 | 408 | Pfam | AP2 domain | 197 | 246 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH7g0159 | 408 | FunFam | Ethylene-responsive transcription factor 2 | 196 | 255 | - | - | |
HCH7g0159 | 408 | MobiDBLite | consensus disorder prediction | 286 | 315 | - | - | |
HCH7g0159 | 408 | ProSiteProfiles | AP2/ERF domain profile. | 197 | 254 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH7g0159 | 408 | PRINTS | Ethylene responsive element binding protein signature | 220 | 236 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH7g0159 | 408 | PRINTS | Ethylene responsive element binding protein signature | 198 | 209 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH7g0159 | 408 | Gene3D | AP2/ERF domain | 197 | 256 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH6g1416 | HCH-Chr6:47977714 | HCH7g0159 | HCH-Chr7:1069008 | 2.00E-24 | dispersed | |
HCH7g0159 | HCH-Chr7:1069008 | HCH7g1792 | HCH-Chr7:49504042 | 7.80E-18 | dispersed | |
HCH2g0811 | HCH-Chr2:51706687 | HCH7g0159 | HCH-Chr7:1069008 | 1.10E-55 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33823 | PF00847 | AP2 | 2.60E-13 | CL0081 | HCH | TF |
Pathway information
