Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0172 ATGGATTGGAAGAGATCTTCTTTTGGGCAATGCAATTTGAGGATCTGTGTGCAGGTTTTAGTTGGATTTGTGATCTGTGCAGCTCAGGTTTTACGTGGGATTACGAATCCCGGCGATTTTACTGCTATCAGTAACTTGCATACGGCACTGGGACTCCCTGTTCTTCCTGGATGGGGCATTGGGCAAGACCCTTGTGGTGATGCATGGCAGGGTGTTGTATGTAATGATTCAAGCATAATTAAAATAGTTCTTAATGCCGCCAATCTGGGAGGTGAACTGGGTGACAACTTGGGAATATTTTCTTCCATCAGAATAATTGATCTAAGCAACAATCATATAGGGGGAAGTATTCCATCCAGTTTACCTGTTACCTTGCAGAACATTTTTCTGTCAGCTAACGAGTTCACCGGTTTCATTCCAATTTCATTATCATTTTTGACTCAACTGACAGCCATGTCATTGAATGATAATAGCTTGAGCGGACAAATACCCGATTCCTTTGAGTCCATTGCTGGACTGGTCAATCTAGATTTATCCAATAACAACTTGAGTGGGCCACTGCCTCCGTCTCTAGAAAATTCGTTGGCTTTGACCACCCTACACTTGCAGAATAATCAGCTATCAGGGACCCTTGACGTTCTACAAGACCTTCCACTAAAAGACTTGAATATAGAGAACAATCTTTTTAATGGACCCATACCTGAGAAGTTGCTGAATATCCCTAATTTTAGAAAGGATGGAAACCCATTTAATTCCTCTGTTTCTCCAACATCTCCAACATCTCCAACAACTCCAACATCTCCGGCATCTCCATCAAAACCAGCAGCAGCACCATCACCACCACTTTCTGGAGCGCCACCTTCTCGACAAAGACCCAGGAAACAGGCTGATGGACCATCTGCGCCAGAGGAATCGAGTTCTGGAGGAAATAAGAAAAAACACCCTAAAAAGGTTGTTTGGATAGCAATTGCAGTGGTGTTGTCATTCATAATTTTGGTTTTGGCCTGTATTCTTTTTATGCCAAGGTGCAAAAGAAGGAGAATGGCCGATAGTATTTCCAAGCGACATCAAATAGGTGCTTATAGAGGCGAGAGAGAGAATGCTGGGAATGATAGATCCATGGATCAAACGACTAATCAGATACCAAAAGTTCCAAAAGAGGCAGTTGTAAGGCCAAAGCAGGAGAGTCAGATCGAGACTCAGAAGATTCCAAAAGCTTATGAAGAGAGAGAGAGAAACAGGCTAAGAATGGATGCTATTCCAAAGAAGGATAATCATGAGATAGATATGAGCACACTTGATGTCTACCTAATGCCCCCTCCTCCTCCACCACCACCTCCCCCTCCACCTCCCCCTCCCCCTCCACCTCCACCTCCACCTCCACCTCCTGTTCAAACGGTCACTGTTGAGTCCATTGGTCCAGCTGAAGTTACCTCCATGAAGCCTCCCACCAAACAGAGAATCACCCCAACTTTTGCAAAATCTTTCACAATTGCATCTCTTCAGCAATATACAAATAGCTTTTCACAAGAGAATCTTCTAGGAGAAGGAATGTTGGGGAGTGTTTATAGGGCACATCTTCCTAATGGAAAGATACTAGCTGTCAAGAAACTGGACAAGAGAGCTTTCAGTCAGCAAAAGGATGATGAGTTCTTTGAGTTAGTGAATAGTATTGATAAAATTCGGCATCCTAATGTAGTTGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTAATCTATGAGTATTGCAGTAATGGGGCATTACAGGATGCACTCCACTCAGATCCCGAGTTTAGAAAGAAACTTTCTTGGAATGCTCGTATTAGAATGGCTCTTGGAGCAGCAAGAGCCTTGGAGTATCTGCATGAGTTTTGTCAGCCACCTGTTATCCATAGAAATTTCAAGTCTGCAAATATCCTACTCGATGATGATCTTTCGGTGCATCTTTCAGATTGTGGTCTGTGTCCTTTAATATCAAAAGGATCTGTCAGTCAGCTATCAGGACAGCTTCTGTCAGCCTATGGTTATGGTGCACCAGAATTTGAATCGGGTATTTATACCCTTGAAAGTGATGTTTACAGTTTTGGCGTCGTTATGTTGGAACTTCTAACTGGTCGGATGTCATATGACAGAACAAGGAGCCGAGGTGAGCAATTTTTAGTCAGATGGGCAATCCCTCAGCTTCATGACATAGAGGCATTAACAAGGATGGTTGATTCTTCACTCAATGGTCAATACCCTGCCAAATCCTTATCATACTTTGCCGATATCATATCCCGGTGTGTTCAGTCGGAGCCCGAATTCCGGCCACCAATGTCCGAAGTTGTCCAAGACTTGCTCAACATGATAAGGAGAGAACCGCATGGTAGCGGTTCAAGTGAAGGTTGA 2397 43.64 MDWKRSSFGQCNLRICVQVLVGFVICAAQVLRGITNPGDFTAISNLHTALGLPVLPGWGIGQDPCGDAWQGVVCNDSSIIKIVLNAANLGGELGDNLGIFSSIRIIDLSNNHIGGSIPSSLPVTLQNIFLSANEFTGFIPISLSFLTQLTAMSLNDNSLSGQIPDSFESIAGLVNLDLSNNNLSGPLPPSLENSLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFNGPIPEKLLNIPNFRKDGNPFNSSVSPTSPTSPTTPTSPASPSKPAAAPSPPLSGAPPSRQRPRKQADGPSAPEESSSGGNKKKHPKKVVWIAIAVVLSFIILVLACILFMPRCKRRRMADSISKRHQIGAYRGERENAGNDRSMDQTTNQIPKVPKEAVVRPKQESQIETQKIPKAYEERERNRLRMDAIPKKDNHEIDMSTLDVYLMPPPPPPPPPPPPPPPPPPPPPPPPPVQTVTVESIGPAEVTSMKPPTKQRITPTFAKSFTIASLQQYTNSFSQENLLGEGMLGSVYRAHLPNGKILAVKKLDKRAFSQQKDDEFFELVNSIDKIRHPNVVELSGYCAEHGERLLIYEYCSNGALQDALHSDPEFRKKLSWNARIRMALGAARALEYLHEFCQPPVIHRNFKSANILLDDDLSVHLSDCGLCPLISKGSVSQLSGQLLSAYGYGAPEFESGIYTLESDVYSFGVVMLELLTGRMSYDRTRSRGEQFLVRWAIPQLHDIEALTRMVDSSLNGQYPAKSLSYFADIISRCVQSEPEFRPPMSEVVQDLLNMIRREPHGSGSSEG 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1136776 1142775 + evm.model.ptg000013l.172 HCH7g0172 547457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0172 798 Pfam Protein tyrosine and serine/threonine kinase 510 782 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g0172 798 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 39 787 IPR046959 -
HCH7g0172 798 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 36 262 - -
HCH7g0172 798 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 474 585 - -
HCH7g0172 798 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 586 795 - -
HCH7g0172 798 Gene3D Transferase(Phosphotransferase) domain 1 586 790 - -
HCH7g0172 798 SUPERFAMILY Protein kinase-like (PK-like) 483 782 IPR011009 -
HCH7g0172 798 ProSiteProfiles Protein kinase domain profile. 508 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g0172 798 MobiDBLite consensus disorder prediction 434 466 - -
HCH7g0172 798 MobiDBLite consensus disorder prediction 436 466 - -
HCH7g0172 798 Gene3D Ribonuclease Inhibitor 42 259 IPR032675 -
HCH7g0172 798 SUPERFAMILY L domain-like 55 242 - -
HCH7g0172 798 SUPERFAMILY Formin homology 2 domain (FH2 domain) 453 463 - -
HCH7g0172 798 Gene3D Phosphorylase Kinase; domain 1 473 585 - -
HCH7g0172 798 MobiDBLite consensus disorder prediction 248 314 - -
HCH7g0172 798 Pfam Leucine Rich Repeat 102 121 IPR001611 GO:0005515(InterPro)
HCH7g0172 798 Pfam Leucine Rich Repeat 149 169 IPR001611 GO:0005515(InterPro)
HCH7g0172 798 Pfam Leucine Rich Repeat 173 193 IPR001611 GO:0005515(InterPro)
HCH7g0172 798 MobiDBLite consensus disorder prediction 261 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0172 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1561 HCH-Chr4:12183257 HCH7g0172 HCH-Chr7:1136776 2.70E-98 dispersed
HCH6g0029 HCH-Chr6:457729 HCH7g0172 HCH-Chr7:1136776 5.50E-115 dispersed
HCH7g0172 HCH-Chr7:1136776 HCH12g0057 HCH-Chr12:291640 2.00E-65 dispersed
HCH14g0886 HCH-Chr14:36578168 HCH7g0172 HCH-Chr7:1136776 1.10E-179 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g0172 . 35 796 Strubbelig Receptor Gene Family AT4G03390 65.2 7.5e-219 757.3
HCH14g0886 . 17 739 Strubbelig Receptor Gene Family AT4G03390 54.2 5.4e-169 591.7
HCH4g1561 . 396 690 Strubbelig Receptor Gene Family AT4G03390 58.5 1.1e-92 338.2
HCH11g0581 . 5 735 Strubbelig Receptor Gene Family AT5G06820 54.9 6.2e-191 664.5
HCH6g0029 . 30 702 Strubbelig Receptor Gene Family AT1G78980 50.5 6.4e-145 511.5
HCH4g1561 . 22 693 Strubbelig Receptor Gene Family AT1G78980 52.1 4.5e-130 462.2
HCH4g1561 . 6 688 Strubbelig Receptor Gene Family AT3G13065 51.5 1.2e-111 401.0
HCH4g1561 . 386 688 Strubbelig Receptor Gene Family AT1G11130 51.8 9.6e-85 311.6
HCH3g0962 . 385 678 Strubbelig Receptor Gene Family AT1G11130 52.7 3.7e-84 309.7
HCH6g0029 . 409 697 Strubbelig Receptor Gene Family AT1G11130 51.9 6.9e-83 305.4
HCH11g0581 . 5 735 Strubbelig Receptor Gene Family AT5G06820 54.9 6.2e-191 664.5
HCH7g0172 . 35 796 Strubbelig Receptor Gene Family AT4G03390 65.2 7.5e-219 757.3
HCH14g0886 . 17 739 Strubbelig Receptor Gene Family AT4G03390 54.2 5.4e-169 591.7
HCH4g1561 . 396 690 Strubbelig Receptor Gene Family AT4G03390 58.5 1.1e-92 338.2
HCH4g1561 . 6 688 Strubbelig Receptor Gene Family AT3G13065 51.5 1.2e-111 401.0
HCH6g0029 . 30 702 Strubbelig Receptor Gene Family AT1G78980 50.5 6.4e-145 511.5
HCH4g1561 . 22 693 Strubbelig Receptor Gene Family AT1G78980 52.1 4.5e-130 462.2
HCH6g0029 . 1 726 Strubbelig Receptor Gene Family AT1G53730 60.2 2.0e-210 729.2
HCH4g1561 . 1 701 Strubbelig Receptor Gene Family AT1G53730 63.4 8.2e-196 680.6
HCH3g0962 . 24 701 Strubbelig Receptor Gene Family AT1G53730 53.5 8.9e-150 527.7
HCH6g0029 . 11 720 Strubbelig Receptor Gene Family AT3G14350 53.4 1.0e-190 663.7
HCH4g1561 . 6 699 Strubbelig Receptor Gene Family AT3G14350 57.0 3.6e-172 602.1
HCH3g0962 . 234 708 Strubbelig Receptor Gene Family AT4G22130 69.4 5.7e-176 614.4
HCH4g1561 . 394 707 Strubbelig Receptor Gene Family AT4G22130 66.8 5.4e-118 421.8
HCH6g0029 . 388 716 Strubbelig Receptor Gene Family AT4G22130 62.5 1.3e-116 417.2
HCH7g0172 . 480 788 Strubbelig Receptor Gene Family AT4G22130 60.8 8.6e-108 387.9
HCH14g0886 . 415 739 Strubbelig Receptor Gene Family AT4G22130 53.9 3.0e-100 362.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81619 PF07714 PK_Tyr_Ser-Thr 5.10E-43 CL0016 HCH PK