Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g0181 ATGACAATTTTCTCCTTCTTCAATAGAGCTTCAAGAGCTTTCCATAGCTCTCCAGCTTACACAAAGCTTCTTATAATCAGCACGTTCAGTAGTGGAGGTTTATTAACATATGCAGAATCACAATCAGAAACTGATATTCCTATTGATGAGAGTAAAAAAAAGAAAGTTTTGGTGCTTGGAACTGGATGGGCTGGTACTAGTTTCCTCAAGGATCTTGATGCTTCTATTTATGATGTTCAAGTTGTTTCACCTCAGAATTATTTTGCATTTACTCCTTTGTTACCTAGTGTCACTTGTGGAACCGTTGAAGCTCGGAGCATTGTCGAACCGATTCGAAACATTGTCAAGAAGAGAAAAGGTGAAGTTAAGTTCTGGGAAGCTGAATGCCTTAAGATTGATGCCGAAAACAAGAAGGTTCTCTGCCGGTCTTGTGTCGAAAACAGCGTTGTTGGAAATAAGGAATTTTCTCTACAATATGACTATTTGGTGATAGCAATAGGAGCACAAGTAAATACTTTTAACACACCTGGTGTTATGGAGAACTGCCATTTTCTCAAGGAAGTAGAAGATGCTCTTAAGATCCGCAGAAGTGTGATCGATTGCTTCGAAATGGCGGTGATTCCTAGTCTGAGCGAAGAAGAGCGAAGGAGAAATCTTCATTTTGTTATTGTTGGAGGGGGTCCAACTGGGATTGAATTTGCTGCAGAGCTTCACGACTTTTTAGAAGAAGATTTAGTAAACTTATATCCTACAGTTAAAGATCTGGTGAAAATTTCAGTGATTCAATCAGGAGATCATATCTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCTGAACAAAAATTCCAAAGAGATGGTATTGATGTGCAAACAGGTTGTCGGGTTGTCAGTGTTTCCGATAAGGACATCAAGATGAAGGTGAAATCAACAGGAGAAGTCTGTTCAATACCGCACGGGCTAATTGTTTGGTCTACCGGTATAATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGCAGTAGACGCATTCTAGCTACTAATGAATGGCTGAAAGTGAAAGGCTCTGAAAATGTGTATGCCATTGGTGACTGTGCTACAATTGACCAACGCAAAATTATGGAAGATATCTCTGCCATATTTGAAGCTGCAGACAAAGACAACTCTGGTACCTTGACAGTTGAAGAATTTCAAGATGTTATAGATGATATCCTCATAAGATATCCTCAAGTGGAACATTATCTGAAGAGCAAACATCTACGCAATGTAAAAGATCTGTTAAAAGATTCCGAGGGGCGTGAGAGGACTGAAGTAGACATTGAAGGATTTAAGTTGGCTCTATCTCATGCTGATTCACAGATGAAAAGTCTGCCGGCTACTGCACAGGTTGCTGCTCAACAGGGTGCATACCTTTCGAGTTGCTTCAACCGCAGGGAACATTGCTCTGAGAACCCTGAAGGTCCTCAACGTTTTAAGAGTTCGGGACGTCATGATTTTCTTCCCTTTCGGTACAAGCATTTGGGGCAATTTGCTCCATTAGGAGGAGACCAAGCTGCTGCAGAACTCCCTGGTGACTGGGTTTCCATGGGTCACAGCACTCAATGGCTCTGGTATTCTGTATATGCAAGTAAGCAGGTGAGCTGGCGCACGAGGTATTTAGTCGTATCCGACTGGACAAGAAGGTTTATCTTTGGCAGAGACTCAAGCCGCATCTGA 1728 41.72 MTIFSFFNRASRAFHSSPAYTKLLIISTFSSGGLLTYAESQSETDIPIDESKKKKVLVLGTGWAGTSFLKDLDASIYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIVEPIRNIVKKRKGEVKFWEAECLKIDAENKKVLCRSCVENSVVGNKEFSLQYDYLVIAIGAQVNTFNTPGVMENCHFLKEVEDALKIRRSVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGIEFAAELHDFLEEDLVNLYPTVKDLVKISVIQSGDHILNAFDERISSFAEQKFQRDGIDVQTGCRVVSVSDKDIKMKVKSTGEVCSIPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILATNEWLKVKGSENVYAIGDCATIDQRKIMEDISAIFEAADKDNSGTLTVEEFQDVIDDILIRYPQVEHYLKSKHLRNVKDLLKDSEGRERTEVDIEGFKLALSHADSQMKSLPATAQVAAQQGAYLSSCFNRREHCSENPEGPQRFKSSGRHDFLPFRYKHLGQFAPLGGDQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRRFIFGRDSSRI 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1188157 1191815 + evm.model.ptg000013l.181 HCH7g0181 547466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g0181 575 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 422 574 - -
HCH7g0181 575 SUPERFAMILY FAD/NAD(P)-binding domain 219 373 IPR036188 -
HCH7g0181 575 SMART efh_1 380 408 IPR002048 GO:0005509(InterPro)
HCH7g0181 575 PANTHER NADH DEHYDROGENASE 41 575 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
HCH7g0181 575 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509(InterPro)
HCH7g0181 575 Pfam Pyridine nucleotide-disulphide oxidoreductase 54 379 IPR023753 GO:0016491(InterPro)
HCH7g0181 575 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
HCH7g0181 575 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 45 405 - -
HCH7g0181 575 Gene3D - 44 402 - -
HCH7g0181 575 Gene3D - 422 574 - -
HCH7g0181 575 SUPERFAMILY EF-hand 374 461 IPR011992 -
HCH7g0181 575 Pfam NDH2 C-terminal domain 510 571 IPR054585 -
HCH7g0181 575 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
HCH7g0181 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
HCH7g0181 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
HCH7g0181 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1070 HCH-Chr13:34277749 HCH7g0181 HCH-Chr7:1188157 5.70E-08 dispersed
HCH2g1017 HCH-Chr2:53394254 HCH7g0181 HCH-Chr7:1188157 3.50E-76 dispersed
HCH14g0883 HCH-Chr14:36556643 HCH7g0181 HCH-Chr7:1188157 2.80E-71 wgd
HCH2g0788 HCH-Chr2:51524667 HCH7g0181 HCH-Chr7:1188157 3.70E-223 wgd
HCH3g0606 HCH-Chr3:4172038 HCH7g0181 HCH-Chr7:1188157 1.90E-235 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g0181 K03885 - csv:101203130 1021.54